HNRNPC (Otolemur garnettii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOGAG00000012543 T39891_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		1.000
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.906
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000011234 RRM 18 81

Links

Other RRM family RBPs
Other Otolemur garnettii RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 1.000
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 1.000
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 1.000
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 1.000
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 1.000
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 1.000
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 1.000
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 1.000
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 1.000
LOC100059269 Equus caballus ENSECAG00000017645 I 1.000
HNRNPC Homo sapiens ENSG00000092199 D 1.000
Hnrnpc Mus musculus ENSMUSG00000060373 I 1.000
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 1.000
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 1.000
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 1.000
HNRNPC Macaca mulatta ENSMMUG00000014809 I 1.000
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 1.000
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 1.000
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 1.000
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 1.000
HNRNPC Sorex araneus ENSSARG00000003711 I 1.000
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 1.000
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 1.000
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 1.000
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 1.000
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 1.000
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.984
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.984
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.984
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.984
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.984
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.984
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.984
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.984
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.984
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.969
AAH41534 Xenopus laevis AAH41534 I 0.938
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.938
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.938
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.938
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.922
AAA60937 Xenopus laevis AAA60937 I 0.922
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.922
AAH71084 Xenopus laevis AAH71084 I 0.922
P19600 Xenopus laevis P19600 I 0.922
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.906
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.906
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.906
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.891
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.891
zgc:55733 Danio rerio ENSDARG00000022579 I 0.891
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.891
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.875
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.875
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.859
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.828
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.828
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.812
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.812
RALYL Sorex araneus ENSSARG00000002374 I 0.812
zgc:55701 Danio rerio ENSDARG00000053810 I 0.812
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.812
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.812
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.812
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.812
RALY Gallus gallus ENSGALG00000002054 I 0.812
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.812
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.812
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.812
RALYL Vicugna pacos ENSVPAG00000008501 I 0.812
RALYL Microcebus murinus ENSMICG00000005558 I 0.812
Ralyl Mus musculus ENSMUSG00000039717 I 0.812
RALYL Oryzias latipes ENSORLG00000012719 I 0.812
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.812
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.812
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.812
RALYL Macaca mulatta ENSMMUG00000031878 I 0.812
RALYL Pan troglodytes ENSPTRG00000020381 I 0.812
RALYL Echinops telfairi ENSETEG00000014028 I 0.812
RALY Anolis carolinensis ENSACAG00000008983 I 0.812
RALYL Oryzias latipes ENSORLG00000017934 I 0.812
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.797
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.797
RALY Myotis lucifugus ENSMLUG00000005330 I 0.797
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.797
LOC770541 Gallus gallus ENSGALG00000015797 I 0.797
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.797
Raly Mus musculus ENSMUSG00000027593 I 0.797
RALY Loxodonta africana ENSLAFG00000000321 I 0.797
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.797
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.797
Raly Rattus norvegicus ENSRNOG00000017405 I 0.797
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.797
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.797
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.797
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.797
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.797
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.797
RALY Tursiops truncatus ENSTTRG00000006590 I 0.797
RALY Vicugna pacos ENSVPAG00000000373 I 0.797
raly Xenopus tropicalis ENSXETG00000019514 I 0.797
RALY Cavia porcellus ENSCPOG00000000309 I 0.797
RALY Canis familiaris ENSCAFG00000007490 I 0.797
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.797
LOC100054239 Equus caballus ENSECAG00000012357 I 0.797
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.797
Raly Dipodomys ordii ENSDORG00000013400 I 0.797
RALY Gorilla gorilla ENSGGOG00000022709 I 0.781
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.781
RALY Ochotona princeps ENSOPRG00000008423 I 0.781
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.781
RALY Homo sapiens ENSG00000125970 D 0.781
RALY Macaca mulatta ENSMMUG00000018093 I 0.781
RALY Pan troglodytes ENSPTRG00000013410 I 0.781
RALY Procavia capensis ENSPCAG00000016867 I 0.781
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.781
raly Danio rerio ENSDARG00000059972 I 0.781
RALY Tupaia belangeri ENSTBEG00000009812 I 0.781
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.781
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.781
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.766
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.766
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.766
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.766
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.766
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.766
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.750
RALY Tarsius syrichta ENSTSYG00000002598 I 0.750
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.734
RALY Gasterosteus aculeatus ENSGACG00000003636 I 0.734