AAA60937 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAA60937 T59425_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.922
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.844
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAA60937 RRM 19 82

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH71084 Xenopus laevis AAH71084 I 1.000
P19600 Xenopus laevis P19600 I 1.000
AAH41534 Xenopus laevis AAH41534 I 0.984
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.938
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.938
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.938
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.922
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.922
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.922
LOC100059269 Equus caballus ENSECAG00000017645 I 0.922
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.922
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.922
HNRNPC Homo sapiens ENSG00000092199 D 0.922
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.922
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.922
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.922
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.922
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.922
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.922
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.922
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.922
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.922
HNRNPC Sorex araneus ENSSARG00000003711 I 0.922
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.922
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.922
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.922
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.922
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.922
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.922
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.922
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.922
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.922
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.922
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.922
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.906
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.906
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.906
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.906
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.906
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.906
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.906
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.891
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.875
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.859
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.859
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.859
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.859
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.844
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.844
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.844
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.844
zgc:55733 Danio rerio ENSDARG00000022579 I 0.844
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.844
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.828
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.828
zgc:55701 Danio rerio ENSDARG00000053810 I 0.828
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.812
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.781
RALYL Oryzias latipes ENSORLG00000012719 I 0.781
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.781
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.781
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.781
RALYL Sorex araneus ENSSARG00000002374 I 0.781
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.781
RALYL Vicugna pacos ENSVPAG00000008501 I 0.781
RALY Anolis carolinensis ENSACAG00000008983 I 0.781
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.781
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.781
RALYL Echinops telfairi ENSETEG00000014028 I 0.781
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.781
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.781
RALYL Pan troglodytes ENSPTRG00000020381 I 0.781
Ralyl Mus musculus ENSMUSG00000039717 I 0.781
RALYL Macaca mulatta ENSMMUG00000031878 I 0.781
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.781
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.781
RALYL Microcebus murinus ENSMICG00000005558 I 0.781
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.781
RALY Gallus gallus ENSGALG00000002054 I 0.781
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.766
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.766
RALY Cavia porcellus ENSCPOG00000000309 I 0.766
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.766
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.766
LOC770541 Gallus gallus ENSGALG00000015797 I 0.766
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.766
raly Xenopus tropicalis ENSXETG00000019514 I 0.766
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.766
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.766
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.766
RALY Macaca mulatta ENSMMUG00000018093 I 0.750
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.750
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.750
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.750
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.750
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.750
RALY Tursiops truncatus ENSTTRG00000006590 I 0.750
RALY Gorilla gorilla ENSGGOG00000022709 I 0.750
RALY Myotis lucifugus ENSMLUG00000005330 I 0.750
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.750
RALY Canis familiaris ENSCAFG00000007490 I 0.750
RALY Vicugna pacos ENSVPAG00000000373 I 0.750
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.750
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.750
raly Danio rerio ENSDARG00000059972 I 0.750
RALY Pan troglodytes ENSPTRG00000013410 I 0.750
RALYL Oryzias latipes ENSORLG00000017934 I 0.750
RALY Homo sapiens ENSG00000125970 D 0.750
LOC100054239 Equus caballus ENSECAG00000012357 I 0.750
RALY Ochotona princeps ENSOPRG00000008423 I 0.750
Raly Dipodomys ordii ENSDORG00000013400 I 0.750
RALY Loxodonta africana ENSLAFG00000000321 I 0.750
Raly Mus musculus ENSMUSG00000027593 I 0.750
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.750
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.750
Raly Rattus norvegicus ENSRNOG00000017405 I 0.750
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.734
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.734
RALY Tupaia belangeri ENSTBEG00000009812 I 0.734
RALY Procavia capensis ENSPCAG00000016867 I 0.734
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.734
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.734
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.719
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.719
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.719
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.719
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.719
RALY Gasterosteus aculeatus ENSGACG00000003636 I 0.703
RALY Tarsius syrichta ENSTSYG00000002598 I 0.703
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.703