RALYL (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000003829 T42222_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.797
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.734
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000009028 RRM 23 86
ENSTRUP00000009029 RRM 26 89
ENSTRUP00000009030 RRM 19 82
ENSTRUP00000009031 RRM 23 86

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.938
RALYL Oryzias latipes ENSORLG00000017934 I 0.906
RALYL Oryzias latipes ENSORLG00000012719 I 0.859
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.859
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.859
LOC770541 Gallus gallus ENSGALG00000015797 I 0.859
RALYL Pan troglodytes ENSPTRG00000020381 I 0.844
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.844
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.844
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.844
Ralyl Mus musculus ENSMUSG00000039717 I 0.844
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.844
RALYL Sorex araneus ENSSARG00000002374 I 0.844
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.844
RALYL Macaca mulatta ENSMMUG00000031878 I 0.844
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.844
RALYL Microcebus murinus ENSMICG00000005558 I 0.844
RALYL Vicugna pacos ENSVPAG00000008501 I 0.844
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.844
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.844
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.844
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.844
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.828
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.828
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.828
RALYL Echinops telfairi ENSETEG00000014028 I 0.828
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.828
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.828
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.828
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.812
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.812
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.812
zgc:55733 Danio rerio ENSDARG00000022579 I 0.812
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.797
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.797
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.797
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.797
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.797
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.797
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.797
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.797
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.797
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.797
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.797
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.797
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.797
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.797
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.797
HNRNPC Sorex araneus ENSSARG00000003711 I 0.797
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.797
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.797
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.797
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.797
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.797
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.797
LOC100059269 Equus caballus ENSECAG00000017645 I 0.797
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.797
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.797
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.797
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.797
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.797
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.797
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.797
HNRNPC Homo sapiens ENSG00000092199 D 0.797
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.797
zgc:55701 Danio rerio ENSDARG00000053810 I 0.781
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.781
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.781
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.781
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.781
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.781
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.781
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.781
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.781
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.781
RALY Procavia capensis ENSPCAG00000016867 I 0.781
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.781
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.781
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.766
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.766
Raly Rattus norvegicus ENSRNOG00000017405 I 0.766
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.766
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.766
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.766
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.766
Raly Dipodomys ordii ENSDORG00000013400 I 0.766
Raly Mus musculus ENSMUSG00000027593 I 0.766
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.766
RALY Canis familiaris ENSCAFG00000007490 I 0.766
RALY Anolis carolinensis ENSACAG00000008983 I 0.766
RALY Tursiops truncatus ENSTTRG00000006590 I 0.766
RALY Vicugna pacos ENSVPAG00000000373 I 0.766
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.766
AAH41534 Xenopus laevis AAH41534 I 0.766
RALY Gallus gallus ENSGALG00000002054 I 0.766
LOC100054239 Equus caballus ENSECAG00000012357 I 0.766
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.766
RALY Myotis lucifugus ENSMLUG00000005330 I 0.766
RALY Loxodonta africana ENSLAFG00000000321 I 0.766
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.750
RALY Gasterosteus aculeatus ENSGACG00000003636 I 0.750
P19600 Xenopus laevis P19600 I 0.750
AAH71084 Xenopus laevis AAH71084 I 0.750
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.750
RALY Tarsius syrichta ENSTSYG00000002598 I 0.750
raly Xenopus tropicalis ENSXETG00000019514 I 0.750
AAA60937 Xenopus laevis AAA60937 I 0.750
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.750
raly Danio rerio ENSDARG00000059972 I 0.750
RALY Cavia porcellus ENSCPOG00000000309 I 0.750
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.750
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.750
RALY Ochotona princeps ENSOPRG00000008423 I 0.750
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.750
RALY Homo sapiens ENSG00000125970 D 0.734
RALY Tupaia belangeri ENSTBEG00000009812 I 0.734
RALY Macaca mulatta ENSMMUG00000018093 I 0.734
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.734
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.734
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.734
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.734
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.734
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.734
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.734
RALY Gorilla gorilla ENSGGOG00000022709 I 0.734
RALY Pan troglodytes ENSPTRG00000013410 I 0.734
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.719
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.719
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.703