ralyl (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000017729 T42912_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.766
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.734
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000038464 RRM 19 82

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC770541 Gallus gallus ENSGALG00000015797 I 0.906
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.906
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.906
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.891
RALYL Microcebus murinus ENSMICG00000005558 I 0.891
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.891
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.891
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.891
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.891
RALYL Sorex araneus ENSSARG00000002374 I 0.891
RALYL Vicugna pacos ENSVPAG00000008501 I 0.891
RALYL Echinops telfairi ENSETEG00000014028 I 0.875
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.875
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.875
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.875
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.875
RALYL Macaca mulatta ENSMMUG00000031878 I 0.875
RALYL Oryzias latipes ENSORLG00000012719 I 0.875
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.875
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.875
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.875
Ralyl Mus musculus ENSMUSG00000039717 I 0.875
RALYL Pan troglodytes ENSPTRG00000020381 I 0.875
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.859
RALYL Oryzias latipes ENSORLG00000017934 I 0.859
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.859
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.844
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.844
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.844
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.797
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.781
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.766
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.766
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.766
RALY Anolis carolinensis ENSACAG00000008983 I 0.766
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.766
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.766
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.766
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.766
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.766
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.766
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.766
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.766
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.766
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.766
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.766
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.766
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.766
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.766
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.766
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.766
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.766
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.766
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.766
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.766
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.766
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.766
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.766
LOC100059269 Equus caballus ENSECAG00000017645 I 0.766
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.766
HNRNPC Homo sapiens ENSG00000092199 D 0.766
HNRNPC Sorex araneus ENSSARG00000003711 I 0.766
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.766
zgc:55733 Danio rerio ENSDARG00000022579 I 0.766
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.766
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.766
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.766
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.750
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.750
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.750
RALY Procavia capensis ENSPCAG00000016867 I 0.750
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.750
AAH41534 Xenopus laevis AAH41534 I 0.750
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.750
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.750
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.750
RALY Gallus gallus ENSGALG00000002054 I 0.750
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.750
Raly Rattus norvegicus ENSRNOG00000017405 I 0.734
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.734
RALY Tarsius syrichta ENSTSYG00000002598 I 0.734
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.734
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.734
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.734
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.734
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.734
RALY Tursiops truncatus ENSTTRG00000006590 I 0.734
RALY Pan troglodytes ENSPTRG00000013410 I 0.734
RALY Vicugna pacos ENSVPAG00000000373 I 0.734
RALY Macaca mulatta ENSMMUG00000018093 I 0.734
RALY Cavia porcellus ENSCPOG00000000309 I 0.734
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.734
zgc:55701 Danio rerio ENSDARG00000053810 I 0.734
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.734
LOC100054239 Equus caballus ENSECAG00000012357 I 0.734
Raly Dipodomys ordii ENSDORG00000013400 I 0.734
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.734
RALY Canis familiaris ENSCAFG00000007490 I 0.734
AAA60937 Xenopus laevis AAA60937 I 0.734
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.734
AAH71084 Xenopus laevis AAH71084 I 0.734
P19600 Xenopus laevis P19600 I 0.734
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.734
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.734
RALY Homo sapiens ENSG00000125970 D 0.734
RALY Myotis lucifugus ENSMLUG00000005330 I 0.734
RALY Loxodonta africana ENSLAFG00000000321 I 0.734
raly Xenopus tropicalis ENSXETG00000019514 I 0.734
Raly Mus musculus ENSMUSG00000027593 I 0.734
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.734
RALY Gorilla gorilla ENSGGOG00000022709 I 0.734
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.734
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.719
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.719
RALY Ochotona princeps ENSOPRG00000008423 I 0.719
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.719
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.719
RALY Tupaia belangeri ENSTBEG00000009812 I 0.719
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.719
raly Danio rerio ENSDARG00000059972 I 0.719
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.703
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.703
RALY Gasterosteus aculeatus ENSGACG00000003636 I 0.703
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.703
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.703
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.703
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.703
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.703