ELAVL4 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000015485 T42138_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.986
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.986
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.986
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.948
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.948
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.948
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.774
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.774
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.774
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.774
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.774
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.774
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.731
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000018555 RRM 53 123
ENSTNIP00000018555 RRM 139 207
ENSTNIP00000018555 RRM 290 360

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.901
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.948
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.986
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.986
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.901
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.948
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.986
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.901
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.986
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.948
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.901
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.986
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.948
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.986
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.948
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.986
elavl2 Danio rerio ENSDARG00000040732 I 0.929
elavl4 Danio rerio ENSDARG00000045639 I 0.981
elavl3 Danio rerio ENSDARG00000014420 I 0.911
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.986
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.986
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.948
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.887
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.948
ELAVL2 Equus caballus ENSECAG00000020142 I 0.948
LOC100051268 Equus caballus ENSECAG00000022284 I 0.986
LOC100056901 Equus caballus ENSECAG00000020594 I 0.822
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.986
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.934
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.986
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.934
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.911
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.991
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.986
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.948
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.901
ELAVL2 Homo sapiens ENSG00000107105 D 0.948
ELAVL4 Homo sapiens ENSG00000162374 D 0.986
ELAVL3 Homo sapiens ENSG00000196361 I 0.901
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.948
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.986
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.901
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.986
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.948
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.906
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.986
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.981
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.986
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.986
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.948
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.869
Elavl3 Mus musculus ENSMUSG00000003410 I 0.892
Elavl2 Mus musculus ENSMUSG00000008489 I 0.948
Elavl4 Mus musculus ENSMUSG00000028546 I 0.986
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.943
ELAVL3 Myotis lucifugus ENSMLUG00000016320 N 0.000
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.986
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.986
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.948
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.948
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.986
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.934
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.902
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.995
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.901
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.986
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.986
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.883
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.948
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.986
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.948
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.864
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.986
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.948
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.883
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.901
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.948
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.892
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.986
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.948
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.986
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.901
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.948
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.986
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.915
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.911
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.920
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 1.000
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.986
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.901
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.902
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.934
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.943
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.901
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.948
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.986
AAI70539 Xenopus laevis AAI70539 I 0.948
CAA59430 Xenopus laevis CAA59430 I 0.939
CBF67567 Xenopus laevis CBF67567 I 0.991
CBU92440 Xenopus laevis CBU92440 I 0.991
Q91584 Xenopus laevis Q91584 I 0.906
AAI69769 Xenopus laevis AAI69769 I 0.906
AAH99348 Xenopus laevis AAH99348 I 0.991
AAH94189 Xenopus laevis AAH94189 I 0.948
AAA96945 Xenopus laevis AAA96945 I 0.991
AAA96944 Xenopus laevis AAA96944 I 0.906
AAA96943 Xenopus laevis AAA96943 I 0.943
Q91903 Xenopus laevis Q91903 I 0.943
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.898
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.991