aret (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0000114 T42986_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret
M003_0.6		 Drosophila melanogaster UKUKUGU RNAcompete
Ray et al.(2013)
RNCMPT00003 		(Direct)
aret
M110_0.6		 Drosophila melanogaster UKUKUGU RNAcompete
Ray et al.(2013)
RNCMPT00114 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M003_0.6 RRM 153 222
M003_0.6 RRM 240 307
M003_0.6 RRM 522 592
M110_0.6 RRM 16 85
M110_0.6 RRM 103 170
M110_0.6 RRM 385 455

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0079926 RRM 359 428
FBpp0079926 RRM 446 512
FBpp0079926 RRM 728 798
FBpp0079927 RRM 153 222
FBpp0079927 RRM 240 307
FBpp0079927 RRM 522 592
FBpp0079928 RRM 153 222
FBpp0079928 RRM 240 307
FBpp0079928 RRM 534 604
FBpp0079929 RRM 1 64
FBpp0079929 RRM 279 349
FBpp0289794 RRM 153 222
FBpp0289794 RRM 240 307
FBpp0289794 RRM 522 592

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL000695 Aedes aegypti AAEL000695 I 0.780
AGAP009477 Anopheles gambiae AGAP009477 N 0.780
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.773
e_gw1.172.82.1 Capitella teleta e_gw1.172.82.1 I 0.708
CpipJ_CPIJ016329 Culex pipiens CpipJ_CPIJ016329 I 0.787
CPIJ016329 Culex quinquefasciatus CPIJ016329 I 0.787
GF14192 Drosophila ananassae FBgn0091219 I 0.990
GG23776 Drosophila erecta FBgn0115915 I 0.995
GH11642 Drosophila grimshawi FBgn0119122 I 0.966
GH11645 Drosophila grimshawi FBgn0119125 I 0.754
FBgn0262475 Drosophila melanogaster FBgn0262475 I 0.774
GI17944 Drosophila mojavensis FBgn0140684 I 0.962
GL18624 Drosophila persimilis FBgn0156225 I 0.754
GL18622 Drosophila persimilis FBgn0156223 N 0.964
GA25731-RA Drosophila pseudoobscura FBgn0247108 N 0.781
GA25725-RB Drosophila pseudoobscura FBgn0247102 I 0.971
GM26763 Drosophila sechellia FBgn0181616 I 0.995
GD23828 Drosophila simulans FBgn0195198 I 0.995
GJ17715 Drosophila virilis FBgn0204884 I 0.976
GJ17718 Drosophila virilis FBgn0204887 I 0.749
GK15495 Drosophila willistoni FBgn0217500 I 0.754
GK15493 Drosophila willistoni FBgn0217498 I 0.990
GE18580 Drosophila yakuba FBgn0235987 I 0.995
GE18585 Drosophila yakuba FBgn0235992 N 0.774