B9H7U5_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0005s21660 T45521_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s21660.1 RRM 98 162
POPTR_0005s21660.1 RRM 193 259
POPTR_0005s21660.1 RRM 331 397
POPTR_0005s21660.1 RRM 441 507

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002893897.1 Arabidopsis lyrata Al_scaffold_0001_3801 N 0.850
PTB3 Arabidopsis thaliana AT1G43190-TAIR-G N 0.850
BRADI2G24150 Brachypodium distachyon BRADI2G24150 N 0.733
BRADI2G56120 Brachypodium distachyon BRADI2G56120 N 0.703
PK14373.1 Cannabis sativa PK14373.1 N 0.842
Cucsa.365870 Cucumis sativus Cucsa.365870 N 0.820
Glyma02g08870.1 Glycine max Glyma02g08870.1 N 0.857
Glyma10g36770.1 Glycine max Glyma10g36770.1 N 0.831
Glyma20g30820.1 Glycine max Glyma20g30820.1 N 0.846
chr5.CM0052.230.nd Lotus japonicus chr5.CM0052.230.nd N 0.842
cassava19040.valid.m1 Manihot esculenta cassava19040.valid.m1 N 0.895
cassava19039.valid.m1 Manihot esculenta cassava19039.valid.m1 N 0.895
cassava19038.valid.m1 Manihot esculenta cassava19038.valid.m1 N 0.895
cassava19037.valid.m1 Manihot esculenta cassava19037.valid.m1 N 0.895
cassava12743.valid.m1 Manihot esculenta cassava12743.valid.m1 N 0.883
Medtr1g124970 Medicago truncatula Medtr1g124970 N 0.831
mgf010164m Mimulus guttatus mgf010164m N 0.850
LOC_Os01g64770 Oryza sativa LOC_Os01g64770 N 0.733
LOC_Os05g36120 Oryza sativa LOC_Os05g36120 N 0.733
PDK_20s1358001g002 Phoenix dactylifera PDK_20s1358001g002 N 0.823
e_gw1.48.34.1 Physcomitrella patens e_gw1.48.34.1 N 0.714
B9GT89_POPTR Populus trichocarpa POPTR_0002s06660 N 0.891
ppa005775m Prunus persica ppa005775m N 0.835
29863.m001059 Ricinus communis 29863.m001059 N 0.876
SB09G021560 Sorghum bicolor Sb09g021560 N 0.729
GSVIVG00034558001 Vitis vinifera GSVIVG00034558001 N 0.865
GRMZM2G052926 Zea mays GRMZM2G052926 N 0.711
GRMZM2G070113 Zea mays GRMZM2G070113 N 0.718