A9PAJ1_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0014s10090 T45651_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.794
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s10090.1 RRM 27 94

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

98 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL002879 Aedes aegypti AAEL002879 I 0.000
AGAP001419 Anopheles gambiae AGAP001419 I 0.000
amel4_ncbi_hmm4283 Apis mellifera amel4_ncbi_hmm4283 I 0.000
NCBI_GNO_2900131 Daphnia pulex NCBI_GNO_2900131 I 0.000
GF16693 Drosophila ananassae FBgn0093714 I 0.000
GG24121 Drosophila erecta FBgn0116260 I 0.000
GH17270 Drosophila grimshawi FBgn0124740 I 0.000
CG17838 Drosophila melanogaster FBgn0038826 D 0.000
GI10594 Drosophila mojavensis FBgn0133358 I 0.000
GA27045-RA Drosophila pseudoobscura FBgn0248416 I 0.000
GM23135 Drosophila sechellia FBgn0178003 I 0.000
GJ22950 Drosophila virilis FBgn0210053 I 0.000
GK22469 Drosophila willistoni FBgn0224446 I 0.000
ISCW004858 Ixodes scapularis ISCW004858 I 0.000
nasonia_NCBI_hmm256414 Nasonia vitripennis nasonia_NCBI_hmm256414 I 0.000
PHUM268060 Pediculus humanus PHUM268060 I 0.000