A9PAJ1_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0014s10090 T45651_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.794
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s10090.1 RRM 27 94

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

98 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000488395 Malus x domestica MDP0000488395 I 0.985
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.985
30076.m004440 Ricinus communis 30076.m004440 I 0.985
MDP0000744398 Malus x domestica MDP0000744398 I 0.971
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.971
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.971
MDP0000548950 Malus x domestica MDP0000548950 I 0.971
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.971
ppa016222m Prunus persica ppa016222m I 0.956
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.956
PK14266.1 Cannabis sativa PK14266.1 I 0.956
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.956
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.956
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.941
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.928
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.926
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.913
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.899
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.884
ppa018603m Prunus persica ppa018603m I 0.870
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.868
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.868
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.853
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.853
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.838
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.838
ppa009716m Prunus persica ppa009716m I 0.838
mgf017214m Mimulus guttatus mgf017214m I 0.838
MDP0000857317 Malus x domestica MDP0000857317 I 0.826
MDP0000118777 Malus x domestica MDP0000118777 I 0.826
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.824
PK21213.1 Cannabis sativa PK21213.1 I 0.824
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.824
CU179634_3 Medicago truncatula CU179634_3 I 0.809
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.809
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.809
MDP0000134468 Malus x domestica MDP0000134468 I 0.809
ppa009964m Prunus persica ppa009964m I 0.809
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.809
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.809
MDP0000138486 Malus x domestica MDP0000138486 I 0.809
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.809
PK15672.1 Cannabis sativa PK15672.1 I 0.797
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.794
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.794
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.794
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.794
ppa018926m Prunus persica ppa018926m I 0.783
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.783
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.783
ppa019392m Prunus persica ppa019392m I 0.783
MDP0000233609 Malus x domestica MDP0000233609 I 0.779
MDP0000284454 Malus x domestica MDP0000284454 I 0.779
MDP0000184420 Malus x domestica MDP0000184420 I 0.779
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.779
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.779
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.779
29908.m006046 Ricinus communis 29908.m006046 I 0.779
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.765
A9PDC5_POPTR Populus trichocarpa POPTR_0015s00790 N 0.765
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.754
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.750
30170.m013735 Ricinus communis 30170.m013735 I 0.750
PK17691.1 Cannabis sativa PK17691.1 N 0.750
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.750
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.739
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.739
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.735
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.735
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.735
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.735
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.735
SB03G041530 Sorghum bicolor Sb03g041530 I 0.735
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.735
29983.m003293 Ricinus communis 29983.m003293 I 0.735
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.725
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.725
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.725
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.725
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.725
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.721
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.721
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.721
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.721
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.710
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.710
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.706
ppa009564m Prunus persica ppa009564m I 0.706
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.706
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.706
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.706
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.706
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.706
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.706
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.706
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.706
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.706
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.706