etr-1 (Caenorhabditis elegans)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 T01D1.2 T46225_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
etr-1
M174_0.6		 Caenorhabditis elegans KKUDUGU RNAcompete
Ray et al.(2013)
RNCMPT00183 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret_CONSTRUCT
M229_0.6 		RNAcompete CONSTRUCTS UKUGUGU RNAcompete
Ray et al.(2013)
RNCMPT00270 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M174_0.6 RRM 57 126
M174_0.6 RRM 144 212
M174_0.6 RRM 505 575

RNA Binding Domains

Protein ID Domain From To Sequence
T01D1.2a.1 RRM 57 126
T01D1.2a.1 RRM 144 212
T01D1.2a.1 RRM 501 571
T01D1.2a.2 RRM 57 126
T01D1.2a.2 RRM 144 212
T01D1.2a.2 RRM 501 571
T01D1.2a.3 RRM 57 126
T01D1.2a.3 RRM 144 212
T01D1.2a.3 RRM 501 571
T01D1.2a.4 RRM 57 126
T01D1.2a.4 RRM 144 212
T01D1.2a.4 RRM 501 571
T01D1.2b RRM 269 339
T01D1.2c RRM 78 122
T01D1.2d RRM 57 126
T01D1.2d RRM 144 209
T01D1.2d RRM 452 522
T01D1.2e RRM 57 126
T01D1.2e RRM 144 212
T01D1.2e RRM 503 573
T01D1.2f RRM 57 126
T01D1.2f RRM 144 212
T01D1.2f RRM 505 575
T01D1.2g RRM 57 126
T01D1.2g RRM 144 212
T01D1.2g RRM 430 500

Links

Other RRM family RBPs
Other Caenorhabditis elegans RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB07703.1 Alternaria brassicicola AB07703.1 N 0.000
XM_002883888.1 Arabidopsis lyrata fgenesh2_kg.3__3143__AT2G20280.1 N 0.000
AT2G20280 Arabidopsis thaliana AT2G20280-TAIR-G N 0.000
ARB_01723 Arthroderma benhamiae ARB_01723 N 0.000
ACLA_016930 Aspergillus clavatus CADACLAG00000891 N 0.000
AFUA_5G13930 Aspergillus fumigatus CADAFUAG00006431 N 0.000
ANIA_06922 Aspergillus nidulans CADANIAG00007728 N 0.000
ATEG_06133 Aspergillus terreus CADATEAG00002525 N 0.000
BC1G_06447 Botrytis cinerea BC1G_06447 N 0.000
BRADI2G54220 Brachypodium distachyon BRADI2G54220 N 0.000
PGUG_02031 Candida guilliermondii PGUG_02031 N 0.000
CTRG_02162 Candida tropicalis CTRG_02162 N 0.000
PK12342.1 Cannabis sativa PK12342.1 N 0.000
CIMG_09790 Coccidioides immitis CIMG_09790 N 0.000
CPSG_09723 Coccidioides posadasii CPSG_09723 N 0.000
estExt_Genewise1.C_60471 Cochliobolus heterostrophus C5 estExt_Genewise1.C_60471 N 0.000
CC1G_07829 Coprinopsis cinerea CC1G_07829 N 0.000
estExt_Genewise1.C_22051 Cryphonectria parasitica estExt_Genewise1.C_22051 N 0.000
CNBG_3113 Cryptococcus neoformans CNBG_3113 N 0.000
PASA_GEN_1200032 Daphnia pulex PASA_GEN_1200032 N 0.000
Glyma03g33420.1 Glycine max Glyma03g33420.1 N 0.000
Glyma10g05550.1 Glycine max Glyma10g05550.1 N 0.000
Glyma19g36150.1 Glycine max Glyma19g36150.1 N 0.000
XP_002158150.1 Hydra magnipapillata XP_002158150.1 N 0.000
chr5.LjT08O17.30.nd Lotus japonicus chr5.LjT08O17.30.nd N 0.000
MGG_07010 Magnaporthe oryzae MGG_07010 N 0.000
MDP0000161236 Malus x domestica MDP0000161236 N 0.000
e_gw1.19.91.1 Melampsora laricis populina e_gw1.19.91.1 N 0.000
Minc08580 Meloidogyne incognita Minc08580 N 0.000
MCYG_02954 Microsporum canis MCYG_02954 N 0.000
MGYG_00125 Microsporum gypseum MGYG_00125 N 0.000
estExt_Genewise1.C_30385 Mucor circinelloides estExt_Genewise1.C_30385 N 0.000
estExt_Genewise1Plus.C_31385 Mycosphaerella fijiensis estExt_Genewise1Plus.C_31385 N 0.000
estExt_fgenesh1_pm.C_chr_90145 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_90145 N 0.000
NFIA_073040 Neosartorya fischeri CADNFIAG00007899 N 0.000
NCU01795 Neurospora crassa NCU01795 N 0.000
estExt_Genewise1.C_110154 Neurospora discreta estExt_Genewise1.C_110154 N 0.000
estExt_fgenesh1_pm.C_130118 Neurospora tetrasperma estExt_fgenesh1_pm.C_130118 N 0.000
PABG_07629 Paracoccidioides brasiliensis PABG_07629 N 0.000
Pc21g03130 Penicillium chrysogenum Pc21g03130 N 0.000
PMAA_036360 Penicillium marneffei PMAA_036360 N 0.000
gwh2.4.391.1 Phanerochaete chrysosporium gwh2.4.391.1 N 0.000
PDK_20s1366191g001 Phoenix dactylifera PDK_20s1366191g001 N 0.000
gw1.1.348.1 Phycomyces blakesleeanus gw1.1.348.1 N 0.000
e_gw1.8.939.1 Pleurotus ostreatus e_gw1.8.939.1 N 0.000
Pa_3_8730 Podospora anserina Pa_3_8730 N 0.000
B9MT73_POPTR Populus trichocarpa POPTR_0308s00200 N 0.000
B9HM02_POPTR Populus trichocarpa POPTR_0008s04540 N 0.000
POPTR_0006s13510 Populus trichocarpa POPTR_0006s13510 N 0.000
ppa007639m Prunus persica ppa007639m N 0.000
PGTG_08922 Puccinia graminis PGTG_08922 N 0.000
29805.m001499 Ricinus communis 29805.m001499 N 0.000
SPRG_03683 Saprolegnia parasitica SPRG_03683 N 0.000
SS1G_13466 Sclerotinia sclerotiorum SS1G_13466 N 0.000
e_gw1.2.668.1 Sporobolomyces roseus e_gw1.2.668.1 N 0.000
TEQG_08385 Trichophyton equinum TEQG_08385 N 0.000
TERG_01412 Trichophyton rubrum TERG_01412 N 0.000
TESG_03135 Trichophyton tonsurans TESG_03135 N 0.000
TRV_03417 Trichophyton verrucosum TRV_03417 N 0.000
UREG_04706 Uncinocarpus reesii UREG_04706 N 0.000
A7TLF2_VANPO Vanderwaltozyma polyspora A7TLF2_VANPO N 0.000
GRMZM2G032258 Zea mays GRMZM2G032258 N 0.000