etr-1 (Caenorhabditis elegans)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 T01D1.2 T46225_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
etr-1
M174_0.6		 Caenorhabditis elegans KKUDUGU RNAcompete
Ray et al.(2013)
RNCMPT00183 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret_CONSTRUCT
M229_0.6 		RNAcompete CONSTRUCTS UKUGUGU RNAcompete
Ray et al.(2013)
RNCMPT00270 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M174_0.6 RRM 57 126
M174_0.6 RRM 144 212
M174_0.6 RRM 505 575

RNA Binding Domains

Protein ID Domain From To Sequence
T01D1.2a.1 RRM 57 126
T01D1.2a.1 RRM 144 212
T01D1.2a.1 RRM 501 571
T01D1.2a.2 RRM 57 126
T01D1.2a.2 RRM 144 212
T01D1.2a.2 RRM 501 571
T01D1.2a.3 RRM 57 126
T01D1.2a.3 RRM 144 212
T01D1.2a.3 RRM 501 571
T01D1.2a.4 RRM 57 126
T01D1.2a.4 RRM 144 212
T01D1.2a.4 RRM 501 571
T01D1.2b RRM 269 339
T01D1.2c RRM 78 122
T01D1.2d RRM 57 126
T01D1.2d RRM 144 209
T01D1.2d RRM 452 522
T01D1.2e RRM 57 126
T01D1.2e RRM 144 212
T01D1.2e RRM 503 573
T01D1.2f RRM 57 126
T01D1.2f RRM 144 212
T01D1.2f RRM 505 575
T01D1.2g RRM 57 126
T01D1.2g RRM 144 212
T01D1.2g RRM 430 500

Links

Other RRM family RBPs
Other Caenorhabditis elegans RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R012775 Ailuropoda melanoleuca Ame_R012775 N 0.000
ZC3H6 Bos taurus ENSBTAG00000020646 N 0.000
ZC3H6 Callithrix jacchus ENSCJAG00000016479 N 0.000
ZC3H6 Canis familiaris ENSCAFG00000007160 N 0.000
ZC3H6 Dasypus novemcinctus ENSDNOG00000000253 N 0.000
Zc3h6 Dipodomys ordii ENSDORG00000013967 N 0.000
ZC3H6 Gorilla gorilla ENSGGOG00000001665 N 0.000
ZC3H6 Homo sapiens ENSG00000188177 N 0.000
ZC3H6 Loxodonta africana ENSLAFG00000001151 N 0.000
ZC3H6 Macaca mulatta ENSMMUG00000016430 N 0.000
ZC3H6 Myotis lucifugus ENSMLUG00000004896 N 0.000
ZC3H6 Ochotona princeps ENSOPRG00000012717 N 0.000
ZC3H6 Oryctolagus cuniculus ENSOCUG00000011125 N 0.000
ZC3H6 Otolemur garnettii ENSOGAG00000002556 N 0.000
ZC3H6 Pan troglodytes ENSPTRG00000012363 N 0.000
ZC3H6 Pteropus vampyrus ENSPVAG00000013728 N 0.000
ZC3H6 Spermophilus tridecemlineatus ENSSTOG00000008120 N 0.000
ZC3H6 Sus scrofa ENSSSCG00000008096 N 0.000
ZC3H6 Tarsius syrichta ENSTSYG00000006672 N 0.000
ZC3H6 Tupaia belangeri ENSTBEG00000016232 N 0.000
ZC3H6 Tursiops truncatus ENSTTRG00000013154 N 0.000
ZC3H6 Vicugna pacos ENSVPAG00000005912 N 0.000