CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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etr-1
(
Caenorhabditis elegans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
T01D1.2
T46225_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
etr-1
M174_0.6
Caenorhabditis elegans
KKUDUGU
RNAcompete
Ray et al.(2013)
RNCMPT00183
(Direct)
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
aret_CONSTRUCT
M229_0.6
RNAcompete CONSTRUCTS
UKUGUGU
RNAcompete
Ray et al.(2013)
RNCMPT00270
0.718
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M174_0.6
RRM
57
126
MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH
M174_0.6
RRM
144
212
LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCS
M174_0.6
RRM
505
575
LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
T01D1.2a.1
RRM
57
126
MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH
T01D1.2a.1
RRM
144
212
LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCS
T01D1.2a.1
RRM
501
571
LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK
T01D1.2a.2
RRM
57
126
MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH
T01D1.2a.2
RRM
144
212
LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCS
T01D1.2a.2
RRM
501
571
LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK
T01D1.2a.3
RRM
57
126
MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH
T01D1.2a.3
RRM
144
212
LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCS
T01D1.2a.3
RRM
501
571
LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK
T01D1.2a.4
RRM
57
126
MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH
T01D1.2a.4
RRM
144
212
LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCS
T01D1.2a.4
RRM
501
571
LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK
T01D1.2b
RRM
269
339
LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK
T01D1.2c
RRM
78
122
LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGEF
T01D1.2d
RRM
57
126
MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH
T01D1.2d
RRM
144
209
LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTME
T01D1.2d
RRM
452
522
LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK
T01D1.2e
RRM
57
126
MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH
T01D1.2e
RRM
144
212
LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCS
T01D1.2e
RRM
503
573
LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK
T01D1.2f
RRM
57
126
MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH
T01D1.2f
RRM
144
212
LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCS
T01D1.2f
RRM
505
575
LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK
T01D1.2g
RRM
57
126
MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH
T01D1.2g
RRM
144
212
LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCS
T01D1.2g
RRM
430
500
LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK
Links
Other
RRM
family RBPs
Other
Caenorhabditis elegans
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R012775
Ailuropoda melanoleuca
Ame_R012775
N
0.000
ZC3H6
Bos taurus
ENSBTAG00000020646
N
0.000
ZC3H6
Callithrix jacchus
ENSCJAG00000016479
N
0.000
ZC3H6
Canis familiaris
ENSCAFG00000007160
N
0.000
ZC3H6
Dasypus novemcinctus
ENSDNOG00000000253
N
0.000
Zc3h6
Dipodomys ordii
ENSDORG00000013967
N
0.000
ZC3H6
Gorilla gorilla
ENSGGOG00000001665
N
0.000
ZC3H6
Homo sapiens
ENSG00000188177
N
0.000
ZC3H6
Loxodonta africana
ENSLAFG00000001151
N
0.000
ZC3H6
Macaca mulatta
ENSMMUG00000016430
N
0.000
ZC3H6
Myotis lucifugus
ENSMLUG00000004896
N
0.000
ZC3H6
Ochotona princeps
ENSOPRG00000012717
N
0.000
ZC3H6
Oryctolagus cuniculus
ENSOCUG00000011125
N
0.000
ZC3H6
Otolemur garnettii
ENSOGAG00000002556
N
0.000
ZC3H6
Pan troglodytes
ENSPTRG00000012363
N
0.000
ZC3H6
Pteropus vampyrus
ENSPVAG00000013728
N
0.000
ZC3H6
Spermophilus tridecemlineatus
ENSSTOG00000008120
N
0.000
ZC3H6
Sus scrofa
ENSSSCG00000008096
N
0.000
ZC3H6
Tarsius syrichta
ENSTSYG00000006672
N
0.000
ZC3H6
Tupaia belangeri
ENSTBEG00000016232
N
0.000
ZC3H6
Tursiops truncatus
ENSTTRG00000013154
N
0.000
ZC3H6
Vicugna pacos
ENSVPAG00000005912
N
0.000