CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.674.7.1
(
Capitella teleta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.674.7.1
T53343_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.674.7.1
RRM
3
72
LLVSNLDFGVDDADVKELFADFGRIKKAVVHHDRSGCSMGTAEVIFDSRDNAVKAIKKYNNVPLDGRAMK
Links
Other
RRM
family RBPs
Other
Capitella teleta
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002880280.1
Arabidopsis lyrata
scaffold_403761.1
N
0.000
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.000
Glyma10g02550.1
Glycine max
Glyma10g02550.1
N
0.000
Glyma10g02540.1
Glycine max
Glyma10g02540.1
N
0.000
Glyma02g17260.1
Glycine max
Glyma02g17260.1
N
0.000
MDP0000207283
Malus x domestica
MDP0000207283
N
0.000
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.000
ppa005229m
Prunus persica
ppa005229m
N
0.000
29647.m002009
Ricinus communis
29647.m002009
N
0.000
GSVIVG00010980001
Vitis vinifera
GSVIVG00010980001
N
0.000