29647.m002009 (Ricinus communis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 29647.m002009 T04675_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29647.m002009 CCCH ZF 52 78
29647.m002009 CCCH ZF 98 123
29647.m002009 CCCH ZF 143 169
29647.m002009 CCCH ZF 303 329
29647.m002009 CCCH ZF 352 375

Links

Other CCCH ZF family RBPs
Other Ricinus communis RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005229m Prunus persica ppa005229m N 0.896
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.888
MDP0000207283 Malus x domestica MDP0000207283 N 0.881
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.873
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.866
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.859
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.859
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.858
Glyma10g02540.1 Glycine max Glyma10g02540.1 N 0.807
MDP0000808281 Malus x domestica MDP0000808281 N 0.763
MDP0000319251 Malus x domestica MDP0000319251 N 0.754
ppa005056m Prunus persica ppa005056m N 0.754
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.754
MDP0000535412 Malus x domestica MDP0000535412 N 0.746
29726.m004014 Ricinus communis 29726.m004014 N 0.746
mgf010716m Mimulus guttatus mgf010716m N 0.739
mgf004851m Mimulus guttatus mgf004851m N 0.739
mgf001793m Mimulus guttatus mgf001793m N 0.739
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.731
mgf002685m Mimulus guttatus mgf002685m N 0.731
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.726
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.724
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.719
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.716
30128.m009030 Ricinus communis 30128.m009030 N 0.716
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.716
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.716
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.711
SB03G009930 Sorghum bicolor Sb03g009930 N 0.711
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.709
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.709
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.704
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.701
PK29685.1 Cannabis sativa PK29685.1 N 0.701