CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_002880280.1
(
Arabidopsis lyrata
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
scaffold_403761.1
T04148_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_403761.1
CCCH ZF
48
74
PGAPDCAYYMRTGVCGYGNRCRYNHPR
scaffold_403761.1
CCCH ZF
93
119
LGEPPCQFYLKTGTCKFGASCKFHHPK
scaffold_403761.1
CCCH ZF
140
165
GDNECSYYLKTGQCKFGITCKFHHPQ
scaffold_403761.1
CCCH ZF
293
319
PGEPECQYYLKTGDCKFGTSCKFHHPR
scaffold_403761.1
CCCH ZF
339
365
PGVQRCTFYVQNGFCKFGSTCKFDHPM
Links
Other
CCCH ZF
family RBPs
Other
Arabidopsis lyrata
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.993
ppa005229m
Prunus persica
ppa005229m
N
0.867
29647.m002009
Ricinus communis
29647.m002009
N
0.859
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.859
MDP0000207283
Malus x domestica
MDP0000207283
N
0.852
Glyma10g02550.1
Glycine max
Glyma10g02550.1
N
0.852
Glyma02g17260.1
Glycine max
Glyma02g17260.1
N
0.837
GSVIVG00010980001
Vitis vinifera
GSVIVG00010980001
N
0.822
Glyma10g02540.1
Glycine max
Glyma10g02540.1
N
0.807
MDP0000808281
Malus x domestica
MDP0000808281
N
0.769
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.741
29726.m004014
Ricinus communis
29726.m004014
N
0.741
ppa005056m
Prunus persica
ppa005056m
N
0.741
mgf004851m
Mimulus guttatus
mgf004851m
N
0.733
MDP0000319251
Malus x domestica
MDP0000319251
N
0.733
mgf001793m
Mimulus guttatus
mgf001793m
N
0.733
mgf010716m
Mimulus guttatus
mgf010716m
N
0.733
cassava43930.valid.m1
Manihot esculenta
cassava43930.valid.m1
N
0.726
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.726
mgf002685m
Mimulus guttatus
mgf002685m
N
0.726
MDP0000535412
Malus x domestica
MDP0000535412
N
0.726
GRMZM2G086994
Zea mays
GRMZM2G086994
N
0.719
cassava17662.valid.m1
Manihot esculenta
cassava17662.valid.m1
N
0.719
30128.m009030
Ricinus communis
30128.m009030
N
0.719
Glyma10g31370.1
Glycine max
Glyma10g31370.1
N
0.719
Medtr8g139290
Medicago truncatula
Medtr8g139290
N
0.716
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.711
Glyma20g36140.1
Glycine max
Glyma20g36140.1
N
0.711
GRMZM2G036837
Zea mays
GRMZM2G036837
N
0.711
SB05G013190
Sorghum bicolor
Sb05g013190
N
0.709
cassava12889.valid.m1
Manihot esculenta
cassava12889.valid.m1
N
0.709
cassava12890.valid.m1
Manihot esculenta
cassava12890.valid.m1
N
0.709
Glyma07g37980.1
Glycine max
Glyma07g37980.1
N
0.709
LOC_Os11g28270
Oryza sativa
LOC_Os11g28270
N
0.704
SB03G009930
Sorghum bicolor
Sb03g009930
N
0.704
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.704
LOC_Os01g15460
Oryza sativa
LOC_Os01g15460
N
0.704
chr1.CM1413.200.nd
Lotus japonicus
chr1.CM1413.200.nd
N
0.704
GRMZM2G100794
Zea mays
GRMZM2G100794
N
0.701