XM_002880280.1 (Arabidopsis lyrata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 scaffold_403761.1 T04148_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_403761.1 CCCH ZF 48 74
scaffold_403761.1 CCCH ZF 93 119
scaffold_403761.1 CCCH ZF 140 165
scaffold_403761.1 CCCH ZF 293 319
scaffold_403761.1 CCCH ZF 339 365

Links

Other CCCH ZF family RBPs
Other Arabidopsis lyrata RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.993
ppa005229m Prunus persica ppa005229m N 0.867
29647.m002009 Ricinus communis 29647.m002009 N 0.859
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.859
MDP0000207283 Malus x domestica MDP0000207283 N 0.852
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.852
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.837
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.822
Glyma10g02540.1 Glycine max Glyma10g02540.1 N 0.807
MDP0000808281 Malus x domestica MDP0000808281 N 0.769
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.741
29726.m004014 Ricinus communis 29726.m004014 N 0.741
ppa005056m Prunus persica ppa005056m N 0.741
mgf004851m Mimulus guttatus mgf004851m N 0.733
MDP0000319251 Malus x domestica MDP0000319251 N 0.733
mgf001793m Mimulus guttatus mgf001793m N 0.733
mgf010716m Mimulus guttatus mgf010716m N 0.733
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.726
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.726
mgf002685m Mimulus guttatus mgf002685m N 0.726
MDP0000535412 Malus x domestica MDP0000535412 N 0.726
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.719
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.719
30128.m009030 Ricinus communis 30128.m009030 N 0.719
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.719
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.716
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.711
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.711
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.711
SB05G013190 Sorghum bicolor Sb05g013190 N 0.709
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.709
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.709
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.709
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.704
SB03G009930 Sorghum bicolor Sb03g009930 N 0.704
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.704
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.704
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.704
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.701