Glyma10g02540.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma10g02540.1 T05425_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma10g02540.1 CCCH ZF 50 76
Glyma10g02540.1 CCCH ZF 95 121
Glyma10g02540.1 CCCH ZF 141 167
Glyma10g02540.1 CCCH ZF 292 318
Glyma10g02540.1 CCCH ZF 336 362

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.926
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.919
ppa005229m Prunus persica ppa005229m N 0.844
MDP0000207283 Malus x domestica MDP0000207283 N 0.830
29647.m002009 Ricinus communis 29647.m002009 N 0.807
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.807
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.807
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.800
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.800
MDP0000808281 Malus x domestica MDP0000808281 N 0.748
mgf010716m Mimulus guttatus mgf010716m N 0.733
mgf001793m Mimulus guttatus mgf001793m N 0.733
mgf004851m Mimulus guttatus mgf004851m N 0.733
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.719
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.704