ppa005229m (Prunus persica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ppa005229m T06514_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa005229m CCCH ZF 45 71
ppa005229m CCCH ZF 91 116
ppa005229m CCCH ZF 136 162
ppa005229m CCCH ZF 292 318
ppa005229m CCCH ZF 338 364

Links

Other CCCH ZF family RBPs
Other Prunus persica RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000207283 Malus x domestica MDP0000207283 N 0.955
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.918
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.903
29647.m002009 Ricinus communis 29647.m002009 N 0.896
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.873
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.867
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.867
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.866
Glyma10g02540.1 Glycine max Glyma10g02540.1 N 0.844
MDP0000808281 Malus x domestica MDP0000808281 N 0.844
mgf010716m Mimulus guttatus mgf010716m N 0.791
mgf004851m Mimulus guttatus mgf004851m N 0.791
mgf001793m Mimulus guttatus mgf001793m N 0.791
MDP0000319251 Malus x domestica MDP0000319251 N 0.769
MDP0000535412 Malus x domestica MDP0000535412 N 0.761
ppa005056m Prunus persica ppa005056m N 0.754
29726.m004014 Ricinus communis 29726.m004014 N 0.754
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.746
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.741
mgf002685m Mimulus guttatus mgf002685m N 0.739
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.739
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.739
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.739
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.731
PK29685.1 Cannabis sativa PK29685.1 N 0.724
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.724
30128.m009030 Ricinus communis 30128.m009030 N 0.724
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.724
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.724
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.719
SB03G009930 Sorghum bicolor Sb03g009930 N 0.711
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.711
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.709
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.709
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.709
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.704
mgf008934m Mimulus guttatus mgf008934m N 0.704
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.704
mgf026218m Mimulus guttatus mgf026218m N 0.701
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.701
ppa005813m Prunus persica ppa005813m N 0.701