Glyma02g17260.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma02g17260.1 T05387_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma02g17260.1 CCCH ZF 49 75
Glyma02g17260.1 CCCH ZF 95 120
Glyma02g17260.1 CCCH ZF 140 166
Glyma02g17260.1 CCCH ZF 297 323
Glyma02g17260.1 CCCH ZF 341 367

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.978
Glyma10g02540.1 Glycine max Glyma10g02540.1 N 0.926
ppa005229m Prunus persica ppa005229m N 0.903
MDP0000207283 Malus x domestica MDP0000207283 N 0.888
29647.m002009 Ricinus communis 29647.m002009 N 0.866
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.866
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.851
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.837
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.837
MDP0000808281 Malus x domestica MDP0000808281 N 0.785
mgf001793m Mimulus guttatus mgf001793m N 0.761
mgf004851m Mimulus guttatus mgf004851m N 0.761
mgf010716m Mimulus guttatus mgf010716m N 0.761
MDP0000319251 Malus x domestica MDP0000319251 N 0.746
PK29685.1 Cannabis sativa PK29685.1 N 0.746
ppa005056m Prunus persica ppa005056m N 0.739
MDP0000535412 Malus x domestica MDP0000535412 N 0.739
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.739
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.731
mgf002685m Mimulus guttatus mgf002685m N 0.731
SB03G009930 Sorghum bicolor Sb03g009930 N 0.726
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.724
29726.m004014 Ricinus communis 29726.m004014 N 0.724
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.719
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.719
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.719
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.716
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.711
mgf008934m Mimulus guttatus mgf008934m N 0.711
30128.m009030 Ricinus communis 30128.m009030 N 0.709
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.709
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.709
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.709
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.704
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.701
mgf026218m Mimulus guttatus mgf026218m N 0.701