Glyma10g02550.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma10g02550.1 T05426_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma10g02550.1 CCCH ZF 49 75
Glyma10g02550.1 CCCH ZF 95 120
Glyma10g02550.1 CCCH ZF 140 166
Glyma10g02550.1 CCCH ZF 297 323
Glyma10g02550.1 CCCH ZF 341 367

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.978
Glyma10g02540.1 Glycine max Glyma10g02540.1 N 0.919
ppa005229m Prunus persica ppa005229m N 0.918
MDP0000207283 Malus x domestica MDP0000207283 N 0.896
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.873
29647.m002009 Ricinus communis 29647.m002009 N 0.873
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.873
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.852
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.852
MDP0000808281 Malus x domestica MDP0000808281 N 0.793
mgf001793m Mimulus guttatus mgf001793m N 0.776
mgf004851m Mimulus guttatus mgf004851m N 0.776
mgf010716m Mimulus guttatus mgf010716m N 0.776
MDP0000319251 Malus x domestica MDP0000319251 N 0.761
PK29685.1 Cannabis sativa PK29685.1 N 0.761
MDP0000535412 Malus x domestica MDP0000535412 N 0.754
ppa005056m Prunus persica ppa005056m N 0.754
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.746
29726.m004014 Ricinus communis 29726.m004014 N 0.739
mgf002685m Mimulus guttatus mgf002685m N 0.739
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.739
SB03G009930 Sorghum bicolor Sb03g009930 N 0.733
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.731
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.731
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.726
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.726
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.726
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.719
mgf008934m Mimulus guttatus mgf008934m N 0.719
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.716
30128.m009030 Ricinus communis 30128.m009030 N 0.716
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.716
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.716
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.711
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.709
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.704
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.701
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.701
mgf026218m Mimulus guttatus mgf026218m N 0.701