CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma10g02550.1
(
Glycine max
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Glyma10g02550.1
T05426_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma10g02550.1
CCCH ZF
49
75
PGVPNCVYYMRTGVCGYGSRCRYNHPR
Glyma10g02550.1
CCCH ZF
95
120
GEPPCQYYLKTGTCKFGASCKFHHPK
Glyma10g02550.1
CCCH ZF
140
166
PGEKECSYYLKTGQCKFGISCKFHHPQ
Glyma10g02550.1
CCCH ZF
297
323
PGEPECQYYLRTGDCKFGLACRYHHPR
Glyma10g02550.1
CCCH ZF
341
367
PGVQPCAFYLQNGHCKFGSTCKFDHPL
Links
Other
CCCH ZF
family RBPs
Other
Glycine max
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma02g17260.1
Glycine max
Glyma02g17260.1
N
0.978
Glyma10g02540.1
Glycine max
Glyma10g02540.1
N
0.919
ppa005229m
Prunus persica
ppa005229m
N
0.918
MDP0000207283
Malus x domestica
MDP0000207283
N
0.896
GSVIVG00010980001
Vitis vinifera
GSVIVG00010980001
N
0.873
29647.m002009
Ricinus communis
29647.m002009
N
0.873
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.873
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.852
XM_002880280.1
Arabidopsis lyrata
scaffold_403761.1
N
0.852
MDP0000808281
Malus x domestica
MDP0000808281
N
0.793
mgf001793m
Mimulus guttatus
mgf001793m
N
0.776
mgf004851m
Mimulus guttatus
mgf004851m
N
0.776
mgf010716m
Mimulus guttatus
mgf010716m
N
0.776
MDP0000319251
Malus x domestica
MDP0000319251
N
0.761
PK29685.1
Cannabis sativa
PK29685.1
N
0.761
MDP0000535412
Malus x domestica
MDP0000535412
N
0.754
ppa005056m
Prunus persica
ppa005056m
N
0.754
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.746
29726.m004014
Ricinus communis
29726.m004014
N
0.739
mgf002685m
Mimulus guttatus
mgf002685m
N
0.739
LOC_Os01g15460
Oryza sativa
LOC_Os01g15460
N
0.739
SB03G009930
Sorghum bicolor
Sb03g009930
N
0.733
Medtr8g139290
Medicago truncatula
Medtr8g139290
N
0.731
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.731
GRMZM2G086994
Zea mays
GRMZM2G086994
N
0.726
GRMZM2G036837
Zea mays
GRMZM2G036837
N
0.726
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.726
cassava43930.valid.m1
Manihot esculenta
cassava43930.valid.m1
N
0.719
mgf008934m
Mimulus guttatus
mgf008934m
N
0.719
cassava17662.valid.m1
Manihot esculenta
cassava17662.valid.m1
N
0.716
30128.m009030
Ricinus communis
30128.m009030
N
0.716
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.716
Glyma10g31370.1
Glycine max
Glyma10g31370.1
N
0.716
LOC_Os01g15350
Oryza sativa
LOC_Os01g15350
N
0.711
Glyma07g37980.1
Glycine max
Glyma07g37980.1
N
0.709
AT3G06410
Arabidopsis thaliana
AT3G06410-TAIR-G
N
0.704
Glyma20g36140.1
Glycine max
Glyma20g36140.1
N
0.701
chr1.CM1413.200.nd
Lotus japonicus
chr1.CM1413.200.nd
N
0.701
mgf026218m
Mimulus guttatus
mgf026218m
N
0.701