GSVIVG00010980001 (Vitis vinifera)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 GSVIVG00010980001 T03871_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00010980001 CCCH ZF 49 75
GSVIVT00010980001 CCCH ZF 95 120
GSVIVT00010980001 CCCH ZF 140 166
GSVIVT00010980001 CCCH ZF 296 322
GSVIVT00010980001 CCCH ZF 342 368

Links

Other CCCH ZF family RBPs
Other Vitis vinifera RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.873
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.873
ppa005229m Prunus persica ppa005229m N 0.866
MDP0000207283 Malus x domestica MDP0000207283 N 0.858
29647.m002009 Ricinus communis 29647.m002009 N 0.858
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.851
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.822
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.822
Glyma10g02540.1 Glycine max Glyma10g02540.1 N 0.800
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.784
MDP0000808281 Malus x domestica MDP0000808281 N 0.770
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.769
MDP0000319251 Malus x domestica MDP0000319251 N 0.761
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.761
ppa005056m Prunus persica ppa005056m N 0.754
MDP0000535412 Malus x domestica MDP0000535412 N 0.754
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.746
29726.m004014 Ricinus communis 29726.m004014 N 0.746
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.739
mgf010716m Mimulus guttatus mgf010716m N 0.739
mgf001793m Mimulus guttatus mgf001793m N 0.739
mgf004851m Mimulus guttatus mgf004851m N 0.739
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.733
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.733
PK29685.1 Cannabis sativa PK29685.1 N 0.731
SB03G009930 Sorghum bicolor Sb03g009930 N 0.726
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.726
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.724
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.719
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.709
mgf002685m Mimulus guttatus mgf002685m N 0.709
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.704
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.704
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.701