CAA59430 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CAA59430 T59686_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.986
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.986
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.986
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.953
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.953
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.953
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.789
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.789
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.789
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.789
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.789
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.789
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.719
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CAA59430 RRM 68 139
CAA59430 RRM 155 223
CAA59430 RRM 308 378

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R010643 Ailuropoda melanoleuca Ame_R010643 N 0.000
LARP4 Anolis carolinensis ENSACAG00000017133 N 0.000
A7MB26_BOVIN Bos taurus ENSBTAG00000017164 N 0.000
LARP4 Callithrix jacchus ENSCJAG00000021131 N 0.000
LARP4 Canis familiaris ENSCAFG00000008174 N 0.000
ENSCPOG00000020519 Cavia porcellus ENSCPOG00000020519 N 0.000
LARP4 Choloepus hoffmanni ENSCHOG00000010490 N 0.000
larp4a Danio rerio ENSDARG00000078401 N 0.000
LARP4 Danio rerio ENSDARG00000074979 N 0.000
LARP4 Dasypus novemcinctus ENSDNOG00000018540 N 0.000
LARP4 Equus caballus ENSECAG00000012479 N 0.000
Q5F449_CHICK Gallus gallus ENSGALG00000006163 N 0.000
LARP4 Gasterosteus aculeatus ENSGACG00000008381 N 0.000
LARP4 Gasterosteus aculeatus ENSGACG00000000680 N 0.000
LARP4 Gorilla gorilla ENSGGOG00000015230 N 0.000
LARP4 Homo sapiens ENSG00000161813 N 0.000
LARP4 Loxodonta africana ENSLAFG00000005160 N 0.000
LOC693337 Macaca mulatta ENSMMUG00000008172 N 0.000
LARP4 Meleagris gallopavo ENSMGAG00000010598 N 0.000
LARP4 Monodelphis domestica ENSMODG00000004844 N 0.000
Larp4 Mus musculus ENSMUSG00000023025 N 0.000
LARP4 Myotis lucifugus ENSMLUG00000012513 N 0.000
LARP4 Ochotona princeps ENSOPRG00000004592 N 0.000
LARP4 Ornithorhynchus anatinus ENSOANG00000004373 N 0.000
ENSOCUG00000026872 Oryctolagus cuniculus ENSOCUG00000026872 N 0.000
ENSOCUG00000021417 Oryctolagus cuniculus ENSOCUG00000021417 N 0.000
LARP4 Oryzias latipes ENSORLG00000018835 N 0.000
LARP4 Oryzias latipes ENSORLG00000006758 N 0.000
XR_019868.1 Pan troglodytes ENSPTRG00000004935 N 0.000
ENSPPYG00000004512 Pongo pygmaeus ENSPPYG00000004512 N 0.000
ENSPPYG00000006330 Pongo pygmaeus ENSPPYG00000006330 N 0.000
LARP4 Procavia capensis ENSPCAG00000003671 N 0.000
LARP4 Pteropus vampyrus ENSPVAG00000016840 N 0.000
LOC683071 Rattus norvegicus ENSRNOG00000042017 N 0.000
LARP4 Sorex araneus ENSSARG00000012469 N 0.000
LARP4 Taeniopygia guttata ENSTGUG00000003479 N 0.000
LARP4 Takifugu rubripes ENSTRUG00000007206 N 0.000
LARP4 Takifugu rubripes ENSTRUG00000015939 N 0.000
LARP4 Tarsius syrichta ENSTSYG00000004342 N 0.000
LARP4 Tetraodon nigroviridis ENSTNIG00000015109 N 0.000
LARP4 Tupaia belangeri ENSTBEG00000005167 N 0.000
LARP4 Tursiops truncatus ENSTTRG00000003764 N 0.000
LARP4 Vicugna pacos ENSVPAG00000010136 N 0.000
AAI24888 Xenopus laevis AAI24888 N 0.000
AAI30197 Xenopus laevis AAI30197 N 0.000
larp4 Xenopus tropicalis ENSXETG00000007283 N 0.000