CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ECT5
(
Arabidopsis thaliana
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
AT3G13060-TAIR-G
T61932_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G13060.1-P
YTH
448
534
LLFSVNASSQFCGVAEMVGPVDFEKSVDYWQQDKWSGQFPVKWHIIKDVPNSQFRHIILENNDNKPVTNSRDTQEVSSNLCLSSFLV
AT3G13060.2-P
YTH
448
538
LLFSVNASSQFCGVAEMVGPVDFEKSVDYWQQDKWSGQFPVKWHIIKDVPNSQFRHIILENNDNKPVTNSRDTQEVKLEQGIEMLKIFKNY
Links
Other
YTH
family RBPs
Other
Arabidopsis thaliana
RBPs
205 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Bm1_06880
Brugia malayi
Bm1_06880
I
0.000
Bm1_16080
Brugia malayi
Bm1_16080
I
0.000
CBN18184
Caenorhabditis brenneri
CBN18184
N
0.000
CBN04295
Caenorhabditis brenneri
CBN04295
I
0.000
CBG07431
Caenorhabditis briggsae
CBG07431
N
0.000
CBG02207
Caenorhabditis briggsae
CBG02207
N
0.000
pab-2
Caenorhabditis elegans
F18H3.3
N
0.000
pab-1
Caenorhabditis elegans
Y106G6H.2
I
0.000
CJA16600
Caenorhabditis japonica
CJA16600
N
0.000
CJA17800
Caenorhabditis japonica
CJA17800
N
0.000
CRE22405
Caenorhabditis remanei
CRE22405
N
0.000
LOAG_01058
Loa loa
LOAG_01058
I
0.000