ECT5 (Arabidopsis thaliana)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 AT3G13060-TAIR-G T61932_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G13060.1-P YTH 448 534
AT3G13060.2-P YTH 448 538

Links

Other YTH family RBPs
Other Arabidopsis thaliana RBPs

205 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 1.000
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.945
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.945
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.945
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.934
PK17832.1 Cannabis sativa PK17832.1 N 0.934
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.934
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.934
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.923
MDP0000287088 Malus x domestica MDP0000287088 N 0.923
MDP0000405927 Malus x domestica MDP0000405927 N 0.923
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.923
ppa002588m Prunus persica ppa002588m N 0.923
MDP0000617859 Malus x domestica MDP0000617859 N 0.923
29929.m004643 Ricinus communis 29929.m004643 N 0.923
ppa002483m Prunus persica ppa002483m N 0.923
MDP0000248088 Malus x domestica MDP0000248088 N 0.912
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.912
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.912
SB07G024500 Sorghum bicolor Sb07g024500 N 0.912
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.912
MDP0000552419 Malus x domestica MDP0000552419 N 0.912
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.901
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.901
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.901
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.901
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.901
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.890
PK01736.1 Cannabis sativa PK01736.1 N 0.879
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.879
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.868
29890.m000285 Ricinus communis 29890.m000285 N 0.868
mgf019821m Mimulus guttatus mgf019821m N 0.857
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.857
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.857
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.857
SB07G006330 Sorghum bicolor Sb07g006330 N 0.846
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.846
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.835
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.835
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.835
PK23104.1 Cannabis sativa PK23104.1 N 0.824
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.824
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.824
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.824
ppa003664m Prunus persica ppa003664m N 0.824
MDP0000171737 Malus x domestica MDP0000171737 N 0.824
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.813
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.813
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.813
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.813
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.813
ppa002677m Prunus persica ppa002677m N 0.813
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.813
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.813
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.813
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.813
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.813
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.813
29955.m001158 Ricinus communis 29955.m001158 N 0.802
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.802
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.802
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.802
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.802
SB06G027960 Sorghum bicolor Sb06g027960 N 0.802
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.802
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.802
PK05579.1 Cannabis sativa PK05579.1 N 0.802
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.802
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.802
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.802
SB03G031190 Sorghum bicolor Sb03g031190 N 0.802
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.802
MDP0000231231 Malus x domestica MDP0000231231 N 0.791
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.791
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.791
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.791
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.791
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.791
MDP0000286471 Malus x domestica MDP0000286471 N 0.791
ppa018635m Prunus persica ppa018635m N 0.791
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.791
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.791
29889.m003364 Ricinus communis 29889.m003364 N 0.791
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.791
MDP0000306387 Malus x domestica MDP0000306387 N 0.780
MDP0000189157 Malus x domestica MDP0000189157 N 0.780
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.780
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.780
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.780
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.780
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.780
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.780
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.780
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.780
SB01G008170 Sorghum bicolor Sb01g008170 N 0.780
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.780
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.780
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.780
MDP0000132385 Malus x domestica MDP0000132385 N 0.780
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.780
mgf017987m Mimulus guttatus mgf017987m N 0.769
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.769
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.769
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.769
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.769
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.769
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.769
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.769
SB02G003990 Sorghum bicolor Sb02g003990 N 0.758
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.758
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.758
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.758
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.758
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.758
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.758
mgf014143m Mimulus guttatus mgf014143m N 0.758
29950.m001140 Ricinus communis 29950.m001140 N 0.758
mgf015583m Mimulus guttatus mgf015583m N 0.758
mgf013935m Mimulus guttatus mgf013935m N 0.747
mgf013853m Mimulus guttatus mgf013853m N 0.747
PK02315.1 Cannabis sativa PK02315.1 N 0.747
MDP0000124048 Malus x domestica MDP0000124048 N 0.747
mgf009938m Mimulus guttatus mgf009938m N 0.747
MDP0000488588 Malus x domestica MDP0000488588 N 0.747
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.747
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.747
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.747
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.747
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.747
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.747
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.747
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.747
SB01G005500 Sorghum bicolor Sb01g005500 N 0.747
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.747
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.747
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.747
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.747
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.747
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.747
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.747
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.747
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.747
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.747
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.747
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.747
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.747
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.747
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.747
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.747
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.747
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.736
29765.m000746 Ricinus communis 29765.m000746 N 0.736
PK26094.1 Cannabis sativa PK26094.1 N 0.736
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.736
BGIOSIBCE028833 Oryza indica BGIOSIBCE028833 N 0.736
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.736
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.736
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.736
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.736
MDP0000718677 Malus x domestica MDP0000718677 N 0.736
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.736
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.736
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.736
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.736
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.736
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.736
MDP0000129009 Malus x domestica MDP0000129009 N 0.736
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.736
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.736
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.725
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.725
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.725
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.725
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.725
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.725
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.725
MDP0000256033 Malus x domestica MDP0000256033 N 0.725
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.725
MDP0000199885 Malus x domestica MDP0000199885 N 0.724
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.714
mgf014829m Mimulus guttatus mgf014829m N 0.714
mgf019846m Mimulus guttatus mgf019846m N 0.714
ppa003557m Prunus persica ppa003557m N 0.714
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.714
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.714
PK23716.1 Cannabis sativa PK23716.1 N 0.714
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.714
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.714
mgf001716m Mimulus guttatus mgf001716m N 0.714
MDP0000299155 Malus x domestica MDP0000299155 N 0.713
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.713
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.713
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.713
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.703
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.703
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.703
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.703
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.703
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.703
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.703
MDP0000488248 Malus x domestica MDP0000488248 N 0.703
GRMZM2G363789 Zea mays GRMZM2G363789 N 0.701