VDAG_09556 (Verticillium dahliae)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 VDAG_09556 T01705_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
VDAG_09556T0 CCCH ZF 43 67
VDAG_09556T0 CCCH ZF 71 93

Links

Other CCCH ZF family RBPs
Other Verticillium dahliae RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
VDBG_09822 Verticillium albo atrum VDBG_09822 N 1.000
estExt_Genewise1.C_110035 Neurospora tetrasperma estExt_Genewise1.C_110035 N 0.920
estExt_Genewise1Plus.C_130028 Neurospora discreta estExt_Genewise1Plus.C_130028 N 0.920
e_gw1.29.29.1 Trichoderma virens e_gw1.29.29.1 N 0.920
estExt_fgenesh5_pg.C_100355 Trichoderma reesei estExt_fgenesh5_pg.C_100355 N 0.920
NCU05007 Neurospora crassa NCU05007 N 0.920
FVEG_07196 Fusarium verticillioides FVEG_07196 N 0.917
FOXG_04082 Fusarium oxysporum FOXG_04082 N 0.917
CHGG_00049 Chaetomium globosum CHGG_00049 N 0.900
estExt_Genewise1.C_60695 Trichoderma atroviride estExt_Genewise1.C_60695 N 0.900
estExt_Genewise1.C_81229 Thielavia terrestris estExt_Genewise1.C_81229 N 0.900
GLRG_01727 Colletotrichum graminicola GLRG_01727 N 0.900
e_gw1.10.437.1 Cryphonectria parasitica e_gw1.10.437.1 N 0.880
Pa_5_7490 Podospora anserina Pa_5_7490 N 0.880
gw1.28.197.1 Nectria haematococca gw1.28.197.1 N 0.880
estExt_fgenesh1_kg.C_60003 Myceliophthora thermophila estExt_fgenesh1_kg.C_60003 N 0.880
MGG_03480 Magnaporthe oryzae MGG_03480 N 0.860
SAKL0H10846g Lachancea kluyveri SAKL0H10846g N 0.780
ADR062W Ashbya gossypii ADR062W N 0.780
KLLA0B09878g Kluyveromyces lactis KLLA0B09878g N 0.760
XP_002493509.1 Pichia pastoris XP_002493509.1 N 0.750
estExt_Genewise1Plus.C_chr_60126 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_60126 N 0.750
SPCC1739.01 Schizosaccharomyces pombe SPCC1739.01 N 0.729
orf19.7385 Candida albicans orf19.7385 N 0.729
Cd36_85970 Candida dubliniensis Cd36_85970 N 0.729
DEHA0D17303g Debaryomyces hansenii DEHA0D17303g N 0.729
Scas_Contig567.6 Saccharomyces castellii Scas_Contig567.6 N 0.720
cps3 Schizosaccharomyces pombe SPAC3A11.02 N 0.708
e_gwh1.2.1.2495.1 Pichia stipitis e_gwh1.2.1.2495.1 N 0.708
Pc20g08250 Penicillium chrysogenum Pc20g08250 N 0.706
PTRG_01963 Pyrenophora tritici repentis PTRG_01963 N 0.700
SJAG_03191 Schizosaccharomyces japonicus SJAG_03191 N 0.700
SNOG_02658 Stagonospora nodorum SNOG_02658 N 0.700
KLTH0E11836g Kluyveromyces thermotolerans KLTH0E11836g N 0.700
AB08315.1 Alternaria brassicicola AB08315.1 N 0.700
estExt_fgenesh1_pg.C_160206 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_160206 N 0.700
EAT89389.2 Phaeosphaeria nodorum EAT89389.2 N 0.700
GSTUMT00003772001 Tuber melanosporum GSTUMT00003772001 N 0.700