Smp_098890 (Schistosoma mansoni)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		Smp_098890 T07710_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF7
M353_0.6 		Homo sapiens ACGAGAGAY SELEX
Cook et al.(2011)
954_10094314 		0.702
SRSF7
M331_0.6 		Homo sapiens AGACKACGAY SELEX
Cook et al.(2011)
790_10094314 		0.702
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Smp_098890.1 RRM 12 77
Smp_098890.1 CCHC ZF 119 136
Smp_098890.2 RRM 12 77
Smp_098890.2 CCHC ZF 119 136
Smp_098890.3 RRM 12 77
Smp_098890.3 CCHC ZF 119 136

Links

Other CCHC ZF,RRM family RBPs
Other Schistosoma mansoni RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Sjc_0048080 Schistosoma japonicum Sjc_0048080 N 0.988
gw1.10.611.1 Lottia gigantea gw1.10.611.1 I 0.774
PHUM241330 Pediculus humanus PHUM241330 I 0.726
amel4_ncbi_hmm42637 Apis mellifera amel4_ncbi_hmm42637 I 0.726
SRSF7 Loxodonta africana ENSLAFG00000005666 I 0.714
SRSF7 Pan troglodytes ENSPTRG00000011851 I 0.714
SRSF7 Ornithorhynchus anatinus ENSOANG00000004405 I 0.714
SRSF7 Macaca mulatta ENSMMUG00000011025 I 0.714
srsf7 Xenopus tropicalis ENSXETG00000025300 I 0.714
estExt_Genewise1.C_1590063 Capitella teleta estExt_Genewise1.C_1590063 I 0.714
Ame_R012465 Ailuropoda melanoleuca Ame_R012465 I 0.714
BGIBMGA010396 Bombyx mori BGIBMGA010396 I 0.714
fgenesh2_pg.scaffold_208000073 Branchiostoma floridae fgenesh2_pg.scaffold_208000073 I 0.714
SRSF7 Homo sapiens ENSG00000115875 D 0.714
e_gw.267.117.1 Branchiostoma floridae e_gw.267.117.1 I 0.714
ENSMODG00000008669 Monodelphis domestica ENSMODG00000008669 I 0.714
LOC100385878 Callithrix jacchus ENSCJAG00000015185 I 0.714
AAH77393 Xenopus laevis AAH77393 I 0.714
AAH77185 Xenopus laevis AAH77185 I 0.714
SRSF7 Vicugna pacos ENSVPAG00000003316 I 0.702
SRSF7 Tarsius syrichta ENSTSYG00000012273 I 0.702
SRSF7 Sus scrofa ENSSSCG00000008484 I 0.702
Sfrs7 Rattus norvegicus ENSRNOG00000027360 I 0.702
SRSF7 Cavia porcellus ENSCPOG00000011785 I 0.702
SRSF7 Tupaia belangeri ENSTBEG00000004604 I 0.702
ENSCAFG00000006272 Canis familiaris ENSCAFG00000006272 I 0.702
CpipJ_CPIJ013237 Culex pipiens CpipJ_CPIJ013237 I 0.702
CPIJ013237 Culex quinquefasciatus CPIJ013237 I 0.702
SRSF7 Anolis carolinensis ENSACAG00000006082 I 0.702
SFRS7_BOVIN Bos taurus ENSBTAG00000014891 I 0.702
SRSF7 Pteropus vampyrus ENSPVAG00000012076 I 0.702
SRSF7 Danio rerio ENSDARG00000035325 I 0.702
LOC100054033 Equus caballus ENSECAG00000008664 I 0.702
Srsf7 Dipodomys ordii ENSDORG00000008616 I 0.702
SRSF7 Myotis lucifugus ENSMLUG00000015692 I 0.702
SRSF7 Meleagris gallopavo ENSMGAG00000007415 I 0.702
SRSF7 Erinaceus europaeus ENSEEUG00000014487 I 0.702
ENSMEUG00000016459 Macropus eugenii ENSMEUG00000016459 I 0.702
Srsf7 Mus musculus ENSMUSG00000024097 I 0.702
SRSF7 Dasypus novemcinctus ENSDNOG00000007821 I 0.702
SRSF7 Procavia capensis ENSPCAG00000011348 I 0.702
ENSPPYG00000012480 Pongo pygmaeus ENSPPYG00000012480 I 0.702
SRSF7 Ochotona princeps ENSOPRG00000010234 I 0.702
SRSF7 Otolemur garnettii ENSOGAG00000010169 I 0.702
SRSF7 Oryctolagus cuniculus ENSOCUG00000004087 I 0.702
SRSF7 Gorilla gorilla ENSGGOG00000014620 I 0.702