e_gw.267.117.1 (Branchiostoma floridae)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		e_gw.267.117.1 T07533_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF7
M353_0.6 		Homo sapiens ACGAGAGAY SELEX
Cook et al.(2011)
954_10094314 		0.714
SRSF7
M331_0.6 		Homo sapiens AGACKACGAY SELEX
Cook et al.(2011)
790_10094314 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.267.117.1 RRM 18 83
e_gw.267.117.1 CCHC ZF 111 128

Links

Other CCHC ZF,RRM family RBPs
Other Branchiostoma floridae RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh2_pg.scaffold_208000073 Branchiostoma floridae fgenesh2_pg.scaffold_208000073 I 1.000
BGIBMGA010396 Bombyx mori BGIBMGA010396 I 0.774
PHUM241330 Pediculus humanus PHUM241330 I 0.762
amel4_ncbi_hmm42637 Apis mellifera amel4_ncbi_hmm42637 I 0.762
CpipJ_CPIJ013237 Culex pipiens CpipJ_CPIJ013237 I 0.738
CPIJ013237 Culex quinquefasciatus CPIJ013237 I 0.738
LOC100385878 Callithrix jacchus ENSCJAG00000015185 I 0.726
SRSF7 Ornithorhynchus anatinus ENSOANG00000004405 I 0.726
SRSF7 Loxodonta africana ENSLAFG00000005666 I 0.726
SRSF7 Pan troglodytes ENSPTRG00000011851 I 0.726
SRSF7 Gasterosteus aculeatus ENSGACG00000012311 I 0.726
SRSF7 Homo sapiens ENSG00000115875 D 0.726
SRSF7 Tetraodon nigroviridis ENSTNIG00000014279 I 0.726
SRSF7 Macaca mulatta ENSMMUG00000011025 I 0.726
Ame_R012465 Ailuropoda melanoleuca Ame_R012465 I 0.726
PHUM284060 Pediculus humanus PHUM284060 I 0.726
SRSF7 Takifugu rubripes ENSTRUG00000010529 I 0.726
DGIL_AUG5s7527g2t1 Acyrtosiphon pisum DGIL_AUG5s7527g2t1 I 0.726
ENSMODG00000008669 Monodelphis domestica ENSMODG00000008669 I 0.726
SRSF7 Ochotona princeps ENSOPRG00000010234 I 0.714
ENSPPYG00000012480 Pongo pygmaeus ENSPPYG00000012480 I 0.714
SRSF7 Oryctolagus cuniculus ENSOCUG00000004087 I 0.714
SRSF7 Otolemur garnettii ENSOGAG00000010169 I 0.714
SRSF7 Procavia capensis ENSPCAG00000011348 I 0.714
SRSF7 Oryzias latipes ENSORLG00000000746 I 0.714
SFRS7 Taeniopygia guttata ENSTGUG00000002080 I 0.714
SRSF7 Vicugna pacos ENSVPAG00000003316 I 0.714
srsf7 Xenopus tropicalis ENSXETG00000025300 I 0.714
ISCW006562 Ixodes scapularis ISCW006562 I 0.714
SRSF7 Tarsius syrichta ENSTSYG00000012273 I 0.714
B5FZ53_TAEGU Taeniopygia guttata ENSTGUG00000002095 I 0.714
Sfrs7 Rattus norvegicus ENSRNOG00000027360 I 0.714
SRSF7 Sus scrofa ENSSSCG00000008484 I 0.714
SRSF7 Tupaia belangeri ENSTBEG00000004604 I 0.714
SRSF7 Pteropus vampyrus ENSPVAG00000012076 I 0.714
ENSMEUG00000016459 Macropus eugenii ENSMEUG00000016459 I 0.714
SFRS7_BOVIN Bos taurus ENSBTAG00000014891 I 0.714
ENSCAFG00000006272 Canis familiaris ENSCAFG00000006272 I 0.714
SRSF7 Cavia porcellus ENSCPOG00000011785 I 0.714
SRSF7 Danio rerio ENSDARG00000035325 I 0.714
SRSF7 Anolis carolinensis ENSACAG00000006082 I 0.714
AAEL017082 Aedes aegypti AAEL017082 I 0.714
Smp_098890 Schistosoma mansoni Smp_098890 I 0.714
AAH77185 Xenopus laevis AAH77185 I 0.714
AAH77393 Xenopus laevis AAH77393 I 0.714
Srsf7 Mus musculus ENSMUSG00000024097 I 0.714
SRSF7 Dasypus novemcinctus ENSDNOG00000007821 I 0.714
SRSF7 Meleagris gallopavo ENSMGAG00000007415 I 0.714
SRSF7 Myotis lucifugus ENSMLUG00000015692 I 0.714
Srsf7 Dipodomys ordii ENSDORG00000008616 I 0.714
SRSF7 Gorilla gorilla ENSGGOG00000014620 I 0.714
LOC100054033 Equus caballus ENSECAG00000008664 I 0.714
Q5ZMI0_CHICK Gallus gallus ENSGALG00000013819 I 0.714
SRSF7 Erinaceus europaeus ENSEEUG00000014487 I 0.714
Sjc_0048080 Schistosoma japonicum Sjc_0048080 N 0.702
ENSMODG00000023693 Monodelphis domestica ENSMODG00000023693 I 0.702
ENSMEUG00000000773 Macropus eugenii ENSMEUG00000000773 I 0.702