srsf7 (Xenopus tropicalis)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSXETG00000025300 T07367_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF7
M353_0.6 		Homo sapiens ACGAGAGAY SELEX
Cook et al.(2011)
954_10094314 		0.964
SRSF7
M331_0.6 		Homo sapiens AGACKACGAY SELEX
Cook et al.(2011)
790_10094314 		0.964
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000040586 RRM 13 78
ENSXETP00000040586 CCHC ZF 104 121
ENSXETP00000054077 RRM 13 78
ENSXETP00000054077 CCHC ZF 104 118

Links

Other CCHC ZF,RRM family RBPs
Other Xenopus tropicalis RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH77185 Xenopus laevis AAH77185 I 1.000
AAH77393 Xenopus laevis AAH77393 I 1.000
SRSF7 Pan troglodytes ENSPTRG00000011851 I 0.976
SRSF7 Homo sapiens ENSG00000115875 D 0.976
Ame_R012465 Ailuropoda melanoleuca Ame_R012465 I 0.976
SRSF7 Loxodonta africana ENSLAFG00000005666 I 0.976
LOC100385878 Callithrix jacchus ENSCJAG00000015185 I 0.976
SRSF7 Macaca mulatta ENSMMUG00000011025 I 0.976
ENSMODG00000008669 Monodelphis domestica ENSMODG00000008669 I 0.976
SRSF7 Ornithorhynchus anatinus ENSOANG00000004405 I 0.976
SRSF7 Cavia porcellus ENSCPOG00000011785 I 0.964
LOC100054033 Equus caballus ENSECAG00000008664 I 0.964
SRSF7 Dasypus novemcinctus ENSDNOG00000007821 I 0.964
Srsf7 Dipodomys ordii ENSDORG00000008616 I 0.964
SRSF7 Ochotona princeps ENSOPRG00000010234 I 0.964
SRSF7 Meleagris gallopavo ENSMGAG00000007415 I 0.964
SRSF7 Myotis lucifugus ENSMLUG00000015692 I 0.964
ENSMEUG00000016459 Macropus eugenii ENSMEUG00000016459 I 0.964
SRSF7 Gorilla gorilla ENSGGOG00000014620 I 0.964
SRSF7 Oryctolagus cuniculus ENSOCUG00000004087 I 0.964
SRSF7 Otolemur garnettii ENSOGAG00000010169 I 0.964
SRSF7 Erinaceus europaeus ENSEEUG00000014487 I 0.964
SFRS7_BOVIN Bos taurus ENSBTAG00000014891 I 0.964
SRSF7 Sus scrofa ENSSSCG00000008484 I 0.964
ENSCAFG00000006272 Canis familiaris ENSCAFG00000006272 I 0.964
SRSF7 Tupaia belangeri ENSTBEG00000004604 I 0.964
Srsf7 Mus musculus ENSMUSG00000024097 I 0.964
SRSF7 Tarsius syrichta ENSTSYG00000012273 I 0.964
SRSF7 Vicugna pacos ENSVPAG00000003316 I 0.964
Sfrs7 Rattus norvegicus ENSRNOG00000027360 I 0.964
SRSF7 Anolis carolinensis ENSACAG00000006082 I 0.964
ENSPPYG00000012480 Pongo pygmaeus ENSPPYG00000012480 I 0.964
SRSF7 Procavia capensis ENSPCAG00000011348 I 0.964
SRSF7 Pteropus vampyrus ENSPVAG00000012076 I 0.964
B5FZ53_TAEGU Taeniopygia guttata ENSTGUG00000002095 I 0.940
ENSMEUG00000000773 Macropus eugenii ENSMEUG00000000773 I 0.940
ENSMODG00000023693 Monodelphis domestica ENSMODG00000023693 I 0.940
Q5ZMI0_CHICK Gallus gallus ENSGALG00000013819 I 0.940
SFRS7 Taeniopygia guttata ENSTGUG00000002080 I 0.940
ENSDARG00000054296 Danio rerio ENSDARG00000054296 I 0.929
ENSRNOG00000025091 Rattus norvegicus ENSRNOG00000025091 I 0.917
ENSRNOG00000033319 Rattus norvegicus ENSRNOG00000033319 I 0.914
SRSF7 Tursiops truncatus ENSTTRG00000014324 I 0.893
ENSCHOG00000002390 Choloepus hoffmanni ENSCHOG00000002390 I 0.869
SRSF7 Takifugu rubripes ENSTRUG00000010529 I 0.845
SRSF7 Tetraodon nigroviridis ENSTNIG00000014279 I 0.845
SRSF7 Gasterosteus aculeatus ENSGACG00000012311 I 0.845
ENSGALG00000013825 Gallus gallus ENSGALG00000013825 I 0.845
SRSF7 Danio rerio ENSDARG00000035325 I 0.833
SRSF7 Oryzias latipes ENSORLG00000000746 I 0.821
amel4_ncbi_hmm42637 Apis mellifera amel4_ncbi_hmm42637 I 0.798
BGIBMGA010396 Bombyx mori BGIBMGA010396 I 0.774
PHUM241330 Pediculus humanus PHUM241330 I 0.774
CpipJ_CPIJ013237 Culex pipiens CpipJ_CPIJ013237 I 0.762
CPIJ013237 Culex quinquefasciatus CPIJ013237 I 0.762
AAEL017082 Aedes aegypti AAEL017082 I 0.762
DGIL_AUG5s7527g2t1 Acyrtosiphon pisum DGIL_AUG5s7527g2t1 I 0.750
PHUM284060 Pediculus humanus PHUM284060 I 0.738
estExt_Genewise1.C_1590063 Capitella teleta estExt_Genewise1.C_1590063 I 0.738
ISCW006562 Ixodes scapularis ISCW006562 I 0.726
AGAP008303 Anopheles gambiae AGAP008303 I 0.726
e_gw.267.117.1 Branchiostoma floridae e_gw.267.117.1 I 0.714
Smp_098890 Schistosoma mansoni Smp_098890 I 0.714
fgenesh2_pg.scaffold_208000073 Branchiostoma floridae fgenesh2_pg.scaffold_208000073 I 0.714
Sjc_0048080 Schistosoma japonicum Sjc_0048080 N 0.702
gw1.10.611.1 Lottia gigantea gw1.10.611.1 I 0.702