CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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amel4_ncbi_hmm42637
(
Apis mellifera
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
amel4_ncbi_hmm42637
T07136_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SRSF7
M353_0.6
Homo sapiens
ACGAGAGAY
SELEX
Cook et al.(2011)
954_10094314
0.774
SRSF7
M331_0.6
Homo sapiens
AGACKACGAY
SELEX
Cook et al.(2011)
790_10094314
0.774
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
amel4_ncbi_hmm42637
RRM
13
78
VYVGDLGSGATKQELEDAFSYYGSLRNVWVARNPPGFAFVEFEDARDAEDAIRGLDGRTICGRRAR
amel4_ncbi_hmm42637
CCHC ZF
105
122
DRCYECGERGHYARNCQR
Links
Other
CCHC ZF,RRM
family RBPs
Other
Apis mellifera
RBPs
66 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ013237
Culex quinquefasciatus
CPIJ013237
I
0.857
BGIBMGA010396
Bombyx mori
BGIBMGA010396
I
0.857
PHUM241330
Pediculus humanus
PHUM241330
I
0.857
CpipJ_CPIJ013237
Culex pipiens
CpipJ_CPIJ013237
I
0.857
DGIL_AUG5s7527g2t1
Acyrtosiphon pisum
DGIL_AUG5s7527g2t1
I
0.845
AAEL017082
Aedes aegypti
AAEL017082
I
0.833
PHUM284060
Pediculus humanus
PHUM284060
I
0.810
AGAP008303
Anopheles gambiae
AGAP008303
I
0.810
srsf7
Xenopus tropicalis
ENSXETG00000025300
I
0.798
AAH77393
Xenopus laevis
AAH77393
I
0.798
AAH77185
Xenopus laevis
AAH77185
I
0.798
ENSMODG00000008669
Monodelphis domestica
ENSMODG00000008669
I
0.786
SRSF7
Macaca mulatta
ENSMMUG00000011025
I
0.786
SRSF7
Pan troglodytes
ENSPTRG00000011851
I
0.786
SRSF7
Loxodonta africana
ENSLAFG00000005666
I
0.786
SRSF7
Homo sapiens
ENSG00000115875
D
0.786
SRSF7
Ornithorhynchus anatinus
ENSOANG00000004405
I
0.786
LOC100385878
Callithrix jacchus
ENSCJAG00000015185
I
0.786
Ame_R012465
Ailuropoda melanoleuca
Ame_R012465
I
0.786
SRSF7
Procavia capensis
ENSPCAG00000011348
I
0.774
SRSF7
Oryctolagus cuniculus
ENSOCUG00000004087
I
0.774
SRSF7
Otolemur garnettii
ENSOGAG00000010169
I
0.774
SRSF7
Tarsius syrichta
ENSTSYG00000012273
I
0.774
SRSF7
Tupaia belangeri
ENSTBEG00000004604
I
0.774
SRSF7
Vicugna pacos
ENSVPAG00000003316
I
0.774
SRSF7
Sus scrofa
ENSSSCG00000008484
I
0.774
Sfrs7
Rattus norvegicus
ENSRNOG00000027360
I
0.774
SRSF7
Pteropus vampyrus
ENSPVAG00000012076
I
0.774
ENSPPYG00000012480
Pongo pygmaeus
ENSPPYG00000012480
I
0.774
SRSF7
Ochotona princeps
ENSOPRG00000010234
I
0.774
SRSF7
Dasypus novemcinctus
ENSDNOG00000007821
I
0.774
Srsf7
Dipodomys ordii
ENSDORG00000008616
I
0.774
Srsf7
Mus musculus
ENSMUSG00000024097
I
0.774
SRSF7
Cavia porcellus
ENSCPOG00000011785
I
0.774
ENSCAFG00000006272
Canis familiaris
ENSCAFG00000006272
I
0.774
SRSF7
Anolis carolinensis
ENSACAG00000006082
I
0.774
SFRS7_BOVIN
Bos taurus
ENSBTAG00000014891
I
0.774
SRSF7
Erinaceus europaeus
ENSEEUG00000014487
I
0.774
LOC100054033
Equus caballus
ENSECAG00000008664
I
0.774
SRSF7
Meleagris gallopavo
ENSMGAG00000007415
I
0.774
ENSMEUG00000016459
Macropus eugenii
ENSMEUG00000016459
I
0.774
SRSF7
Gorilla gorilla
ENSGGOG00000014620
I
0.774
SRSF7
Myotis lucifugus
ENSMLUG00000015692
I
0.774
SFRS7
Taeniopygia guttata
ENSTGUG00000002080
I
0.762
e_gw.267.117.1
Branchiostoma floridae
e_gw.267.117.1
I
0.762
Q5ZMI0_CHICK
Gallus gallus
ENSGALG00000013819
I
0.762
SRSF7
Gasterosteus aculeatus
ENSGACG00000012311
I
0.762
fgenesh2_pg.scaffold_208000073
Branchiostoma floridae
fgenesh2_pg.scaffold_208000073
I
0.762
B5FZ53_TAEGU
Taeniopygia guttata
ENSTGUG00000002095
I
0.762
SRSF7
Tetraodon nigroviridis
ENSTNIG00000014279
I
0.762
SRSF7
Takifugu rubripes
ENSTRUG00000010529
I
0.762
SRSF7
Danio rerio
ENSDARG00000035325
I
0.762
SRSF7
Oryzias latipes
ENSORLG00000000746
I
0.750
ENSMODG00000023693
Monodelphis domestica
ENSMODG00000023693
I
0.750
ENSRNOG00000025091
Rattus norvegicus
ENSRNOG00000025091
I
0.750
ENSMEUG00000000773
Macropus eugenii
ENSMEUG00000000773
I
0.750
xl6
Drosophila melanogaster
FBgn0028554
N
0.750
ENSDARG00000054296
Danio rerio
ENSDARG00000054296
I
0.750
ISCW006562
Ixodes scapularis
ISCW006562
I
0.738
ENSCHOG00000002390
Choloepus hoffmanni
ENSCHOG00000002390
I
0.726
Smp_098890
Schistosoma mansoni
Smp_098890
I
0.726
gw1.10.611.1
Lottia gigantea
gw1.10.611.1
I
0.726
Sjc_0048080
Schistosoma japonicum
Sjc_0048080
N
0.714
ENSRNOG00000033319
Rattus norvegicus
ENSRNOG00000033319
I
0.702
estExt_Genewise1.C_1590063
Capitella teleta
estExt_Genewise1.C_1590063
I
0.702
SRSF7
Tursiops truncatus
ENSTTRG00000014324
I
0.702