RGD1562120 (Rattus norvegicus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSRNOG00000040034 T17006_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.789
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.789
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.722
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.722
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.722
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000058264 CSD 30 100

Links

Other CSD family RBPs
Other Rattus norvegicus RBPs

117 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CSDA Echinops telfairi ENSETEG00000002557 I 0.764
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.764
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.764
LOC100067336 Equus caballus ENSECAG00000023592 I 0.764
CSDA Homo sapiens ENSG00000060138 I 0.764
YB-1 Homo sapiens ENSG00000065978 D 0.764
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.764
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.764
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.764
LOC100065107 Equus caballus ENSECAG00000013777 I 0.764
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.764
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.764
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.764
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.764
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.764
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.764
Csda Dipodomys ordii ENSDORG00000009103 I 0.764
ybx1 Danio rerio ENSDARG00000004757 I 0.764
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.764
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.764
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.764
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.764
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.764
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.764
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.764
CSDA Pan troglodytes ENSPTRG00000004681 I 0.764
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.764
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.764
Csda Rattus norvegicus ENSRNOG00000005480 I 0.764
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.764
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.764
Csda Mus musculus ENSMUSG00000030189 I 0.764
YBX1 Microcebus murinus ENSMICG00000014984 I 0.764
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.764
CSDA Loxodonta africana ENSLAFG00000017247 I 0.764
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.764
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.764
Ybx1 Mus musculus ENSMUSG00000028639 I 0.764
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.764
CSDA Macaca mulatta ENSMMUG00000022469 I 0.764
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.764
CSDA Cavia porcellus ENSCPOG00000011329 I 0.764
AAH41191 Xenopus laevis AAH41191 I 0.764
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.764
AAH42217 Xenopus laevis AAH42217 I 0.764
AAI06324 Xenopus laevis AAI06324 I 0.764
CAA42778 Xenopus laevis CAA42778 I 0.764
AAI30161 Xenopus laevis AAI30161 I 0.764
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.764
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.764
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.764
CSDA Sus scrofa ENSSSCG00000000633 I 0.764
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.764
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.764
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.764
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.764
P21573 Xenopus laevis P21573 I 0.764
AAA49715 Xenopus laevis AAA49715 I 0.764
Q00436 Xenopus laevis Q00436 I 0.764
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.764
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.764
CSDA Monodelphis domestica ENSMODG00000018248 I 0.750
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.750
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.750
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.750
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.750
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.750
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.746
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.736
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.736
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.736
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.736
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.736
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.732
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.722
YBX2 Sus scrofa ENSSSCG00000017938 I 0.722
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.722
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.722
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.722
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.722
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.722
Ybx2 Mus musculus ENSMUSG00000018554 I 0.722
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.722
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.722
YBX2 Procavia capensis ENSPCAG00000008019 I 0.722
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.722
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.722
YBX2 Canis familiaris ENSCAFG00000016128 I 0.722
csda Xenopus tropicalis ENSXETG00000016239 I 0.722
AAI69704 Xenopus laevis AAI69704 I 0.722
AAI55915 Xenopus laevis AAI55915 I 0.722
ybx2-a Xenopus laevis AAI69706 D 0.722
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.722
P21574 Xenopus laevis P21574 I 0.722
LOC100072964 Equus caballus ENSECAG00000009996 I 0.722
AAA49716 Xenopus laevis AAA49716 I 0.722
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.722
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.722
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.718
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.718
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.718
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.718
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.712
AAA49924 Xenopus laevis AAA49924 I 0.708
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.708
YBX2 Sorex araneus ENSSARG00000000488 I 0.708
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.708
P45441 Xenopus laevis P45441 I 0.708
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.708
CSDA Procavia capensis ENSPCAG00000001397 I 0.708
YBX2 Homo sapiens ENSG00000006047 D 0.708
AAI55914 Xenopus laevis AAI55914 I 0.708
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.708
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.704
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.704
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.704
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.704