ENSCAFG00000005471 (Canis familiaris)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCAFG00000005471 T16761_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.877
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.877
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.811
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.811
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.811
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.797
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000032040 CSD 51 123

Links

Other CSD family RBPs
Other Canis familiaris RBPs

158 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.851
CSDA Macaca mulatta ENSMMUG00000022469 I 0.851
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.851
AAH42217 Xenopus laevis AAH42217 I 0.851
AAH41191 Xenopus laevis AAH41191 I 0.851
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.851
Csda Mus musculus ENSMUSG00000030189 I 0.851
Ybx1 Mus musculus ENSMUSG00000028639 I 0.851
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.851
AAI06324 Xenopus laevis AAI06324 I 0.851
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.851
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.851
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.851
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.851
CSDA Loxodonta africana ENSLAFG00000017247 I 0.851
AAI30161 Xenopus laevis AAI30161 I 0.851
YBX1 Microcebus murinus ENSMICG00000014984 I 0.851
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.851
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.851
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.851
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.851
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.851
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.851
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.851
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.851
CSDA Sus scrofa ENSSSCG00000000633 I 0.851
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.851
Csda Rattus norvegicus ENSRNOG00000005480 I 0.851
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.851
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.851
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.851
AAA49715 Xenopus laevis AAA49715 I 0.851
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.851
CSDA Pan troglodytes ENSPTRG00000004681 I 0.851
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.851
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.851
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.851
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.851
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.851
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.851
LOC100065107 Equus caballus ENSECAG00000013777 I 0.851
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.851
LOC100067336 Equus caballus ENSECAG00000023592 I 0.851
CSDA Cavia porcellus ENSCPOG00000011329 I 0.851
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.851
ybx1 Danio rerio ENSDARG00000004757 I 0.851
P21573 Xenopus laevis P21573 I 0.851
Csda Dipodomys ordii ENSDORG00000009103 I 0.851
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.851
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.851
CAA42778 Xenopus laevis CAA42778 I 0.851
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.851
Q00436 Xenopus laevis Q00436 I 0.851
CSDA Homo sapiens ENSG00000060138 I 0.851
YB-1 Homo sapiens ENSG00000065978 D 0.851
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.851
CSDA Echinops telfairi ENSETEG00000002557 I 0.851
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.851
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.851
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.851
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.851
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.838
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.838
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.838
CSDA Monodelphis domestica ENSMODG00000018248 I 0.838
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.838
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.824
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.824
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.824
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.824
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.824
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.824
YBX2 Canis familiaris ENSCAFG00000016128 I 0.811
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.811
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.811
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.811
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.811
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.811
LOC100072964 Equus caballus ENSECAG00000009996 I 0.811
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.811
YBX2 Sus scrofa ENSSSCG00000017938 I 0.811
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.811
ybx2-a Xenopus laevis AAI69706 D 0.811
AAI55915 Xenopus laevis AAI55915 I 0.811
YBX2 Procavia capensis ENSPCAG00000008019 I 0.811
Ybx2 Mus musculus ENSMUSG00000018554 I 0.811
P21574 Xenopus laevis P21574 I 0.811
csda Xenopus tropicalis ENSXETG00000016239 I 0.811
AAI69704 Xenopus laevis AAI69704 I 0.811
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.811
AAA49716 Xenopus laevis AAA49716 I 0.811
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.808
AAA49924 Xenopus laevis AAA49924 I 0.797
P45441 Xenopus laevis P45441 I 0.797
AAI55914 Xenopus laevis AAI55914 I 0.797
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.797
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.797
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.797
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.797
YBX2 Homo sapiens ENSG00000006047 D 0.797
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.797
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.797
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.797
YBX2 Sorex araneus ENSSARG00000000488 I 0.797
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.795
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.795
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.795
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.795
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.784
CSDA Procavia capensis ENSPCAG00000001397 I 0.784
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.784
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.781
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.781
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.781
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.781
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.770
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.770
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.767
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.767
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.767
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.767
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.757
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.757
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.753
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.753
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.753
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.753
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.753
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.740
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.740
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.740
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.740
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.740
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.740
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.730
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.726
ISCW005281 Ixodes scapularis ISCW005281 I 0.726
YBX1 Sorex araneus ENSSARG00000012628 I 0.726
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.726
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.726
PHUM156710 Pediculus humanus PHUM156710 I 0.726
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.716
CSDA Vicugna pacos ENSVPAG00000000876 I 0.716
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.716
CSDA Microcebus murinus ENSMICG00000004602 I 0.716
GH16919 Drosophila grimshawi FBgn0124390 I 0.712
GF10852 Drosophila ananassae FBgn0087892 I 0.712
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.712
GI13673 Drosophila mojavensis FBgn0136428 I 0.712
GK16710 Drosophila willistoni FBgn0218712 I 0.712
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.712
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.712
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.712
PHUM156720 Pediculus humanus PHUM156720 I 0.712
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.712
GL15684 Drosophila persimilis FBgn0153288 I 0.712
GJ14010 Drosophila virilis FBgn0201228 I 0.712
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.703