KHDRBS3 (Gasterosteus aculeatus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSGACG00000008847 T18834_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHDRBS3
M033_0.6 		Homo sapiens AUAAAV RNAcompete
Ray et al.(2013)
RNCMPT00034 		0.928
KHDRBS2
M176_0.6 		Homo sapiens RAUAAAM RNAcompete
Ray et al.(2013)
RNCMPT00185 		0.798
KHDRBS1
M160_0.6 		Homo sapiens AUAAAAV RNAcompete
Ray et al.(2013)
RNCMPT00169 		0.706
Khdrbs1
M060_0.6 		Mus musculus UAAAAVV RNAcompete
Ray et al.(2013)
RNCMPT00062 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000011673 KH 29 111

Links

Other KH family RBPs
Other Gasterosteus aculeatus RBPs

96 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
KHDRBS3 Tetraodon nigroviridis ENSTNIG00000014021 I 0.988
KHDRBS3 Takifugu rubripes ENSTRUG00000013451 I 0.988
KHDRBS3 Oryzias latipes ENSORLG00000013441 I 0.976
KHDRBS3 Taeniopygia guttata ENSTGUG00000012611 I 0.928
KHDRBS3 Oryctolagus cuniculus ENSOCUG00000000743 I 0.928
KHDRBS3 Spermophilus tridecemlineatus ENSSTOG00000008710 I 0.928
KHDRBS3 Sus scrofa ENSSSCG00000005941 I 0.928
KHDRBS3 Otolemur garnettii ENSOGAG00000005150 I 0.928
Q6J4Q9_PANTR Pan troglodytes ENSPTRG00000020608 I 0.928
KHDRBS3 Ochotona princeps ENSOPRG00000000404 I 0.928
KHDRBS3 Tursiops truncatus ENSTTRG00000001270 I 0.928
KHDRBS3 Cavia porcellus ENSCPOG00000000342 I 0.928
KHDRBS3 Echinops telfairi ENSETEG00000004701 I 0.928
KHDRBS3 Homo sapiens ENSG00000131773 D 0.928
LOC100399263 Callithrix jacchus ENSCJAG00000004331 I 0.928
KHDRBS3 Canis familiaris ENSCAFG00000001166 I 0.928
Ame_R010681 Ailuropoda melanoleuca Ame_R010681 I 0.928
KHDRBS3 Anolis carolinensis ENSACAG00000012042 I 0.928
A4FV24_BOVIN Bos taurus ENSBTAG00000002181 I 0.928
KHDRBS3 Ornithorhynchus anatinus ENSOANG00000014074 I 0.928
KHDRBS3 Tupaia belangeri ENSTBEG00000004773 I 0.928
Q6J4Q8_9PRIM Gorilla gorilla ENSGGOG00000000940 I 0.928
KHDRBS3 Meleagris gallopavo ENSMGAG00000012888 I 0.928
KHDRBS3 Loxodonta africana ENSLAFG00000004849 I 0.928
KHDRBS3 Gallus gallus ENSGALG00000016203 I 0.928
Khdrbs3 Mus musculus ENSMUSG00000022332 I 0.928
KHDRBS3 Monodelphis domestica ENSMODG00000000975 I 0.928
Q6J4Q6_MACMU Macaca mulatta ENSMMUG00000022248 I 0.928
LOC100058116 Equus caballus ENSECAG00000010194 I 0.916
khdrbs3 Xenopus tropicalis ENSXETG00000009227 I 0.916
KHDRBS3 Pteropus vampyrus ENSPVAG00000017021 I 0.905
KHDRBS2 Macaca mulatta ENSMMUG00000003329 I 0.798
KHDRBS2 Cavia porcellus ENSCPOG00000025621 I 0.798
KHDRBS2 Sus scrofa ENSSSCG00000001490 I 0.798
KHDRBS2 Tursiops truncatus ENSTTRG00000005591 I 0.798
LOC100395662 Callithrix jacchus ENSCJAG00000001766 I 0.798
KHDRBS2 Taeniopygia guttata ENSTGUG00000012786 I 0.798
KHDRBS2 Meleagris gallopavo ENSMGAG00000013877 I 0.798
KHDRBS2 Dasypus novemcinctus ENSDNOG00000014028 I 0.798
Khdrbs2 Rattus norvegicus ENSRNOG00000012284 I 0.798
KHDRBS2 Anolis carolinensis ENSACAG00000006691 I 0.798
KHDRBS2 Gorilla gorilla ENSGGOG00000025068 I 0.798
KHDRBS2 Homo sapiens ENSG00000112232 D 0.798
KHDRBS2 Monodelphis domestica ENSMODG00000018714 I 0.798
KHDRBS2 Oryctolagus cuniculus ENSOCUG00000012344 I 0.798
KHDRBS2 Canis familiaris ENSCAFG00000002470 I 0.798
Khdrbs2 Mus musculus ENSMUSG00000026058 I 0.798
KHDRBS2 Bos taurus ENSBTAG00000043990 I 0.798
KHDRBS2 Loxodonta africana ENSLAFG00000006655 I 0.798
LOC100056966 Equus caballus ENSECAG00000021541 I 0.798
KHDRBS2 Tarsius syrichta ENSTSYG00000007203 I 0.798
KHDRBS2 Pan troglodytes ENSPTRG00000018311 I 0.798
KHDRBS2 Erinaceus europaeus ENSEEUG00000003986 I 0.798
KHDRBS2 Gallus gallus ENSGALG00000016276 I 0.798
Khdrbs3 Rattus norvegicus ENSRNOG00000009539 I 0.795
KHDRBS3 Sorex araneus ENSSARG00000011751 I 0.795
KHDRBS2 Vicugna pacos ENSVPAG00000001469 I 0.786
Khdrbs2 Dipodomys ordii ENSDORG00000005701 I 0.786
KHDRBS2 Takifugu rubripes ENSTRUG00000015760 I 0.786
khdrbs2 Danio rerio ENSDARG00000069469 I 0.786
KHDRBS2 Oryzias latipes ENSORLG00000010165 I 0.774
KHDRBS2 Gasterosteus aculeatus ENSGACG00000006097 I 0.774
KHDRBS3 Tarsius syrichta ENSTSYG00000004106 I 0.771
KHDRBS2 Procavia capensis ENSPCAG00000001426 I 0.735
e_gw.41.46.1 Nematostella vectensis e_gw.41.46.1 I 0.721
Ame_R015982 Ailuropoda melanoleuca Ame_R015982 I 0.711
KHDRBS2 Myotis lucifugus ENSMLUG00000005484 I 0.711
ENSCHOG00000006973 Choloepus hoffmanni ENSCHOG00000006973 I 0.706
KHDRBS1 Homo sapiens ENSG00000121774 D 0.706
KHDRBS1 Canis familiaris ENSCAFG00000010777 I 0.706
LOC100414412 Callithrix jacchus ENSCJAG00000006580 I 0.706
KHDRBS1 Gorilla gorilla ENSGGOG00000008633 I 0.706
KHDRBS1 Cavia porcellus ENSCPOG00000024148 I 0.706
KHDRBS1 Equus caballus ENSECAG00000019346 I 0.706
KHDRBS1 Felis catus ENSFCAG00000006511 I 0.706
KHDRBS1 Meleagris gallopavo ENSMGAG00000004455 I 0.706
ENSPPYG00000001605 Pongo pygmaeus ENSPPYG00000001605 I 0.706
KHDRBS1 Pan troglodytes ENSPTRG00000000469 I 0.706
KHDRBS1 Macaca mulatta ENSMMUG00000023438 I 0.706
KHDRBS1 Pteropus vampyrus ENSPVAG00000013289 I 0.706
KHDRBS1 Procavia capensis ENSPCAG00000009844 I 0.706
KHDRBS1 Ochotona princeps ENSOPRG00000005131 I 0.706
KHDRBS1 Ornithorhynchus anatinus ENSOANG00000012357 I 0.706
KHDRBS1 Oryctolagus cuniculus ENSOCUG00000007654 I 0.706
XM_001365874.1 Monodelphis domestica ENSMODG00000017551 I 0.706
KHDRBS1 Spermophilus tridecemlineatus ENSSTOG00000014138 I 0.706
KHDR1_CHICK Gallus gallus ENSGALG00000003272 I 0.706
KHDRBS1 Vicugna pacos ENSVPAG00000006966 I 0.706
Ame_R010128 Ailuropoda melanoleuca Ame_R010128 I 0.706
KHDRBS1 Loxodonta africana ENSLAFG00000009414 I 0.706
KHDRBS1 Tursiops truncatus ENSTTRG00000009637 I 0.706
Khdrbs1 Mus musculus ENSMUSG00000028790 D 0.706
KHDRBS1 Tupaia belangeri ENSTBEG00000016857 I 0.706
KHDRBS1 Tarsius syrichta ENSTSYG00000004921 I 0.706
Q29RQ2_BOVIN Bos taurus ENSBTAG00000012497 I 0.706
KHDRBS1 Taeniopygia guttata ENSTGUG00000017346 I 0.702