A9PGS1_POPTR (Populus trichocarpa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 POPTR_0022s00450 T20236_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0022s00450.1 KH 45 130

Links

Other KH family RBPs
Other Populus trichocarpa RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N0F3_POPTR Populus trichocarpa POPTR_0004s23460 N 0.953
cassava15324.m1 Manihot esculenta cassava15324.m1 N 0.930
cassava13309.valid.m1 Manihot esculenta cassava13309.valid.m1 N 0.930
cassava13308.valid.m1 Manihot esculenta cassava13308.valid.m1 N 0.930
29765.m000727 Ricinus communis 29765.m000727 N 0.919
PK01720.1 Cannabis sativa PK01720.1 N 0.907
MDP0000077749 Malus x domestica MDP0000077749 N 0.895
Glyma12g28690.1 Glycine max Glyma12g28690.1 N 0.885
ppa009432m Prunus persica ppa009432m N 0.884
MDP0000300654 Malus x domestica MDP0000300654 N 0.884
PDK_20s1559651g001 Phoenix dactylifera PDK_20s1559651g001 N 0.802
SB09G020640 Sorghum bicolor Sb09g020640 N 0.802
chr6.LjT09E22.140.nd Lotus japonicus chr6.LjT09E22.140.nd N 0.770
A9PGC0_POPTR Populus trichocarpa POPTR_0011s17110 N 0.744
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.744
mgf020149m Mimulus guttatus mgf020149m N 0.744
BRADI1G53760 Brachypodium distachyon BRADI1G53760 N 0.733
MDP0000077753 Malus x domestica MDP0000077753 N 0.733
MDP0000268130 Malus x domestica MDP0000268130 N 0.733
POPTR_0001s47500 Populus trichocarpa POPTR_0001s47500 N 0.721
cassava13904.valid.m1 Manihot esculenta cassava13904.valid.m1 N 0.721
POPTR_0016s14760 Populus trichocarpa POPTR_0016s14760 N 0.713