POPTR_0001s47500 (Populus trichocarpa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 POPTR_0001s47500 T20193_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s47500.1 KH 71 155
POPTR_0001s47500.2 KH 27 104
POPTR_0001s47500.3 KH 30 114

Links

Other KH family RBPs
Other Populus trichocarpa RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A9PGC0_POPTR Populus trichocarpa POPTR_0011s17110 N 0.976
28128.m000156 Ricinus communis 28128.m000156 N 0.824
ppa009341m Prunus persica ppa009341m N 0.753
Glyma04g12370.1 Glycine max Glyma04g12370.1 N 0.741
Glyma03g00370.1 Glycine max Glyma03g00370.1 N 0.741
Glyma06g48070.1 Glycine max Glyma06g48070.1 N 0.729
GSVIVG00014762001 Vitis vinifera GSVIVG00014762001 N 0.729
cassava30587.valid.m1 Manihot esculenta cassava30587.valid.m1 N 0.729
29765.m000727 Ricinus communis 29765.m000727 N 0.721
A9PGS1_POPTR Populus trichocarpa POPTR_0022s00450 N 0.721
PK16956.1 Cannabis sativa PK16956.1 N 0.718
BRADI3G56540 Brachypodium distachyon BRADI3G56540 N 0.718
estExt_gwp_gw1.C_680211 Physcomitrella patens estExt_gwp_gw1.C_680211 N 0.718
B9N0F3_POPTR Populus trichocarpa POPTR_0004s23460 N 0.706
ppa009432m Prunus persica ppa009432m N 0.706
PK01720.1 Cannabis sativa PK01720.1 N 0.706
MDP0000077749 Malus x domestica MDP0000077749 N 0.706
Glyma18g05680.1 Glycine max Glyma18g05680.1 N 0.706
cassava13309.valid.m1 Manihot esculenta cassava13309.valid.m1 N 0.706
cassava13308.valid.m1 Manihot esculenta cassava13308.valid.m1 N 0.706
cassava15324.m1 Manihot esculenta cassava15324.m1 N 0.706
SB09G020640 Sorghum bicolor Sb09g020640 N 0.706
mgf005196m Mimulus guttatus mgf005196m N 0.705
PDK_20s1595621g003 Phoenix dactylifera PDK_20s1595621g003 N 0.705
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.705
chr3.CM0634.210.nc Lotus japonicus chr3.CM0634.210.nc N 0.705
POPTR_0016s14760 Populus trichocarpa POPTR_0016s14760 N 0.701