A9PGC0_POPTR (Populus trichocarpa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 POPTR_0011s17110 T20220_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s17110.1 KH 141 225

Links

Other KH family RBPs
Other Populus trichocarpa RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
POPTR_0001s47500 Populus trichocarpa POPTR_0001s47500 N 0.976
28128.m000156 Ricinus communis 28128.m000156 N 0.824
Glyma03g00370.1 Glycine max Glyma03g00370.1 N 0.765
ppa009341m Prunus persica ppa009341m N 0.753
A9PGS1_POPTR Populus trichocarpa POPTR_0022s00450 N 0.744
29765.m000727 Ricinus communis 29765.m000727 N 0.744
Glyma04g12370.1 Glycine max Glyma04g12370.1 N 0.741
ppa009432m Prunus persica ppa009432m N 0.729
GSVIVG00014762001 Vitis vinifera GSVIVG00014762001 N 0.729
B9N0F3_POPTR Populus trichocarpa POPTR_0004s23460 N 0.729
MDP0000077749 Malus x domestica MDP0000077749 N 0.729
PK01720.1 Cannabis sativa PK01720.1 N 0.729
Glyma18g05680.1 Glycine max Glyma18g05680.1 N 0.729
Glyma06g48070.1 Glycine max Glyma06g48070.1 N 0.729
cassava15324.m1 Manihot esculenta cassava15324.m1 N 0.729
cassava30587.valid.m1 Manihot esculenta cassava30587.valid.m1 N 0.729
cassava13309.valid.m1 Manihot esculenta cassava13309.valid.m1 N 0.729
cassava13308.valid.m1 Manihot esculenta cassava13308.valid.m1 N 0.729
POPTR_0016s14760 Populus trichocarpa POPTR_0016s14760 N 0.724
BRADI3G56540 Brachypodium distachyon BRADI3G56540 N 0.718
PK16956.1 Cannabis sativa PK16956.1 N 0.718
estExt_gwp_gw1.C_680211 Physcomitrella patens estExt_gwp_gw1.C_680211 N 0.718
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.718
MDP0000300654 Malus x domestica MDP0000300654 N 0.718
Glyma12g28690.1 Glycine max Glyma12g28690.1 N 0.709
SB09G020640 Sorghum bicolor Sb09g020640 N 0.706
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.706
PDK_20s1559651g001 Phoenix dactylifera PDK_20s1559651g001 N 0.706
BRADI2G22090 Brachypodium distachyon BRADI2G22090 N 0.706