POPTR_0016s14760 (Populus trichocarpa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 POPTR_0016s14760 T20227_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s14760.1 KH 22 106

Links

Other KH family RBPs
Other Populus trichocarpa RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma03g00370.1 Glycine max Glyma03g00370.1 N 0.918
B9IGX2_POPTR Populus trichocarpa POPTR_0006s11210 N 0.882
ppa009701m Prunus persica ppa009701m N 0.847
Cucsa.130740 Cucumis sativus Cucsa.130740 N 0.847
Glyma09g40820.1 Glycine max Glyma09g40820.1 N 0.847
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.835
Glyma18g05680.1 Glycine max Glyma18g05680.1 N 0.835
LjT28H07.110.nc Lotus japonicus LjT28H07.110.nc N 0.835
27955.m000377 Ricinus communis 27955.m000377 N 0.835
BRADI2G22090 Brachypodium distachyon BRADI2G22090 N 0.826
MDP0000665847 Malus x domestica MDP0000665847 N 0.824
MDP0000186494 Malus x domestica MDP0000186494 N 0.824
Cucsa.177080 Cucumis sativus Cucsa.177080 N 0.824
cassava39581.m1 Manihot esculenta cassava39581.m1 N 0.824
mgf005196m Mimulus guttatus mgf005196m N 0.824
chr3.CM0634.210.nc Lotus japonicus chr3.CM0634.210.nc N 0.812
PK23097.1 Cannabis sativa PK23097.1 N 0.812
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.812
Medtr7g080640 Medicago truncatula Medtr7g080640 N 0.812
cassava25198.valid.m1 Manihot esculenta cassava25198.valid.m1 N 0.812
XM_002881558.1 Arabidopsis lyrata fgenesh2_kg.4__1930__AT2G38610.2 N 0.802
AT2G38610 Arabidopsis thaliana AT2G38610-TAIR-G N 0.802
Medtr8g005390 Medicago truncatula Medtr8g005390 N 0.800
MDP0000119110 Malus x domestica MDP0000119110 N 0.800
MDP0000501473 Malus x domestica MDP0000501473 N 0.800
Medtr8g005290 Medicago truncatula Medtr8g005290 N 0.800
GSVIVG00029865001 Vitis vinifera GSVIVG00029865001 N 0.800
LOC_Os05g40290 Oryza sativa LOC_Os05g40290 N 0.793
BGIOSIBCE019437 Oryza indica BGIOSIBCE019437 N 0.793
Glyma16g34750.1 Glycine max Glyma16g34750.1 N 0.788
AT3G08620 Arabidopsis thaliana AT3G08620-TAIR-G N 0.788
XM_002882529.1 Arabidopsis lyrata fgenesh2_kg.3__864__AT3G08620.1 N 0.776
Medtr3g083820 Medicago truncatula Medtr3g083820 N 0.776
PDK_20s1595621g003 Phoenix dactylifera PDK_20s1595621g003 N 0.776
SB03G038070 Sorghum bicolor Sb03g038070 N 0.770
AC218972.3_FG007 Zea mays AC218972.3_FG007 N 0.770
GRMZM2G093006 Zea mays GRMZM2G093006 N 0.770
BRADI1G53760 Brachypodium distachyon BRADI1G53760 N 0.770
GRMZM2G122569 Zea mays GRMZM2G122569 N 0.767
PK22673.1 Cannabis sativa PK22673.1 N 0.765
BGIOSIBCE024206 Oryza indica BGIOSIBCE024206 N 0.759
GRMZM2G085582 Zea mays GRMZM2G085582 N 0.759
SB09G023640 Sorghum bicolor Sb09g023640 N 0.756
Medtr5g083520 Medicago truncatula Medtr5g083520 N 0.753
LOC_Os01g60260 Oryza sativa LOC_Os01g60260 N 0.747
LOC_Os07g12490 Oryza sativa LOC_Os07g12490 N 0.747
Glyma14g38730.1 Glycine max Glyma14g38730.1 N 0.741
Glyma11g31530.1 Glycine max Glyma11g31530.1 N 0.741
Glyma02g40440.1 Glycine max Glyma02g40440.1 N 0.741
BRADI1G04120 Brachypodium distachyon BRADI1G04120 N 0.741
LjSGA_139736.1.1 Lotus japonicus LjSGA_139736.1.1 N 0.733
SB02G006770 Sorghum bicolor Sb02g006770 N 0.729
A9PGC0_POPTR Populus trichocarpa POPTR_0011s17110 N 0.724
29765.m000727 Ricinus communis 29765.m000727 N 0.713
A9PGS1_POPTR Populus trichocarpa POPTR_0022s00450 N 0.713
SB01G003680 Sorghum bicolor Sb01g003680 N 0.706
GRMZM2G063643 Zea mays GRMZM2G063643 N 0.706
B9INJ7_POPTR Populus trichocarpa POPTR_0019s15270 N 0.706
POPTR_0001s47500 Populus trichocarpa POPTR_0001s47500 N 0.701