XM_002869600.1 (Arabidopsis lyrata)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 scaffold_701722.1 T24467_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_701722.1 PUF 530 563
scaffold_701722.1 PUF 566 599
scaffold_701722.1 PUF 603 635
scaffold_701722.1 PUF 639 672
scaffold_701722.1 PUF 674 706
scaffold_701722.1 PUF 711 745
scaffold_701722.1 PUF 747 781
scaffold_701722.1 PUF 789 823

Links

Other PUF family RBPs
Other Arabidopsis lyrata RBPs

8 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
APUM6 Arabidopsis thaliana AT4G25880-TAIR-G N 0.974
ppa000898m Prunus persica ppa000898m N 0.723
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.719
MDP0000265231 Malus x domestica MDP0000265231 N 0.715
PK12245.1 Cannabis sativa PK12245.1 N 0.712
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.708
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.705
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.701