ppa000898m (Prunus persica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ppa000898m T25242_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa000898m PUF 639 673
ppa000898m PUF 675 709
ppa000898m PUF 711 746
ppa000898m PUF 747 781
ppa000898m PUF 783 818
ppa000898m PUF 820 854
ppa000898m PUF 856 890
ppa000898m PUF 898 931

Links

Other PUF family RBPs
Other Prunus persica RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000265231 Malus x domestica MDP0000265231 N 0.911
PK12245.1 Cannabis sativa PK12245.1 N 0.890
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.869
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.851
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.848
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.840
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.840
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.823
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.819
MDP0000277305 Malus x domestica MDP0000277305 N 0.812
ppa016404m Prunus persica ppa016404m N 0.805
mgf002285m Mimulus guttatus mgf002285m N 0.794
mgf006786m Mimulus guttatus mgf006786m N 0.794
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.794
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.787
MDP0000313902 Malus x domestica MDP0000313902 N 0.780
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.777
30169.m006300 Ricinus communis 30169.m006300 N 0.777
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.770
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.749
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.748
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.746
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.746
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.742
PK11972.1 Cannabis sativa PK11972.1 N 0.740
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.734
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.734
APUM6 Arabidopsis thaliana AT4G25880-TAIR-G N 0.730
XM_002869600.1 Arabidopsis lyrata scaffold_701722.1 N 0.723
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.722
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.717
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.716
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.713
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.713
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.707
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.706
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.706