cassava43126.valid.m1 (Manihot esculenta)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 cassava43126.valid.m1 T24706_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava43126.valid.m1 PUF 652 686
cassava43126.valid.m1 PUF 688 722
cassava43126.valid.m1 PUF 724 758
cassava43126.valid.m1 PUF 760 794
cassava43126.valid.m1 PUF 797 831
cassava43126.valid.m1 PUF 833 867
cassava43126.valid.m1 PUF 869 903
cassava43126.valid.m1 PUF 912 945

Links

Other PUF family RBPs
Other Manihot esculenta RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.854
PK12245.1 Cannabis sativa PK12245.1 N 0.843
ppa000898m Prunus persica ppa000898m N 0.840
MDP0000265231 Malus x domestica MDP0000265231 N 0.836
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.836
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.826
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.819
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.790
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.786
MDP0000277305 Malus x domestica MDP0000277305 N 0.780
mgf002285m Mimulus guttatus mgf002285m N 0.776
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.773
ppa016404m Prunus persica ppa016404m N 0.773
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.759
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.758
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.755
30169.m006300 Ricinus communis 30169.m006300 N 0.751
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.749
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.749
MDP0000313902 Malus x domestica MDP0000313902 N 0.745
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.731
APUM6 Arabidopsis thaliana AT4G25880-TAIR-G N 0.730
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.724
mgf006786m Mimulus guttatus mgf006786m N 0.723
XM_002869600.1 Arabidopsis lyrata scaffold_701722.1 N 0.719
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.713
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.703
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.702
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.701