CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PK12245.1
(
Cannabis sativa
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
PK12245.1
T23980_0.6
Cannabis sativa genome (2012-Feb-20)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK12245.1
PUF
662
696
DIIGHIVEFSSDQHGSRFIQQKLENCSVEEKASVF
PK12245.1
PUF
698
732
EVLPHASKLMTDVFGNYVIQKFFEYGSHDQRKELA
PK12245.1
PUF
734
768
QLRGQILPLSLQMYGCRVIQKALEVIDLEQKAQLV
PK12245.1
PUF
770
804
ELDGHVMRCVRDQNGNHVIQKCIESIPTEKIAFII
PK12245.1
PUF
806
841
AFRGQVATLSMHPYGCRVIQRVLEHCTDELQCQFIV
PK12245.1
PUF
843
877
EILESVCTLAQDQYGNYVTQHVLERGKANERSLII
PK12245.1
PUF
879
913
KLSGHVVQLSQHKFASNVIEKCLEHGGPADRELLI
PK12245.1
PUF
921
952
EGNDNLLTMMKDQYANYVVQKTLEICTDSQRI
Links
Other
PUF
family RBPs
Other
Cannabis sativa
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000265231
Malus x domestica
MDP0000265231
N
0.900
ppa000898m
Prunus persica
ppa000898m
N
0.890
Glyma09g06460.1
Glycine max
Glyma09g06460.1
N
0.851
cassava43126.valid.m1
Manihot esculenta
cassava43126.valid.m1
N
0.843
GSVIVG00031557001
Vitis vinifera
GSVIVG00031557001
N
0.843
Glyma15g17680.1
Glycine max
Glyma15g17680.1
N
0.843
Glyma13g00670.1
Glycine max
Glyma13g00670.1
N
0.836
POPTR_0022s00840
Populus trichocarpa
POPTR_0022s00840
N
0.826
Medtr2g041730
Medicago truncatula
Medtr2g041730
N
0.801
ppa016404m
Prunus persica
ppa016404m
N
0.798
MDP0000277305
Malus x domestica
MDP0000277305
N
0.794
mgf002285m
Mimulus guttatus
mgf002285m
N
0.786
30169.m006300
Ricinus communis
30169.m006300
N
0.780
mgf006786m
Mimulus guttatus
mgf006786m
N
0.777
cassava9350.m1
Manihot esculenta
cassava9350.m1
N
0.777
GSVIVG00029553001
Vitis vinifera
GSVIVG00029553001
N
0.773
Cucsa.149730
Cucumis sativus
Cucsa.149730
N
0.770
B9HK27_POPTR
Populus trichocarpa
POPTR_0008s00490
N
0.766
MDP0000313902
Malus x domestica
MDP0000313902
N
0.759
LOC_Os08g40830
Oryza sativa
LOC_Os08g40830
N
0.753
GRMZM2G035118
Zea mays
GRMZM2G035118
N
0.753
BGIOSIBCE028530
Oryza indica
BGIOSIBCE028530
N
0.753
Sb07g026995
Sorghum bicolor
Sb07g026995
N
0.746
GRMZM2G449123
Zea mays
GRMZM2G449123
N
0.734
e_gw1.96.1.1
Physcomitrella patens
e_gw1.96.1.1
N
0.723
APUM6
Arabidopsis thaliana
AT4G25880-TAIR-G
N
0.719
PK11972.1
Cannabis sativa
PK11972.1
N
0.719
gw1.2.45.1
Selaginella moellendorfii
gw1.2.45.1
N
0.719
APUM5
Arabidopsis thaliana
AT3G20250-TAIR-G
N
0.715
XM_002869600.1
Arabidopsis lyrata
scaffold_701722.1
N
0.712
BRADI3G40520
Brachypodium distachyon
BRADI3G40520
N
0.703
e_gw1.7.1189.1
Selaginella moellendorfii
e_gw1.7.1189.1
N
0.702
estExt_Genewise1.C_350182
Physcomitrella patens
estExt_Genewise1.C_350182
N
0.702