CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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POPTR_0022s00840
(
Populus trichocarpa
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
POPTR_0022s00840
T24434_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0022s00840.1
PUF
635
669
DIVGHIVEFSADQHGSRFIQQKLENCSAEEKALVF
POPTR_0022s00840.1
PUF
671
705
EVLPHASKLMTDVFGNYLIQKVFEYGSMEQRKELA
POPTR_0022s00840.1
PUF
707
741
QLTGQILHLSLQMYGCRVIQKALDVIELDQKAQLV
POPTR_0022s00840.1
PUF
743
777
ELDGHVMKCVRDQNGNHVIQKCIESVPAEKIGFIF
POPTR_0022s00840.1
PUF
782
814
GEVATLSMHPYGCRVIQRVLEHCAYELQCEFIV
POPTR_0022s00840.1
PUF
816
850
EILESVLILAQDQYGNYVTQHVLERGKPRERYQII
POPTR_0022s00840.1
PUF
852
886
KLSGHIVLLSQHKFGSNVVEKCLEYGGATEREIII
POPTR_0022s00840.1
PUF
894
928
EGNDNLLTMMKDQYANYVVQKILDTCTDIQRAMLL
POPTR_0022s00840.2
PUF
635
669
DIVGHIVEFSADQHGSRFIQQKLENCSAEEKALVF
POPTR_0022s00840.2
PUF
671
705
EVLPHASKLMTDVFGNYLIQKVFEYGSMEQRKELA
POPTR_0022s00840.2
PUF
707
741
QLTGQILHLSLQMYGCRVIQKALDVIELDQKAQLV
POPTR_0022s00840.2
PUF
743
777
ELDGHVMKCVRDQNGNHVIQKCIESVPAEKIGFIF
POPTR_0022s00840.2
PUF
782
814
GEVATLSMHPYGCRVIQRVLEHCAYELQCEFIV
POPTR_0022s00840.2
PUF
816
835
EILESVLILAQDQYGNYVTQ
POPTR_0022s00840.3
PUF
635
669
DIVGHIVEFSADQHGSRFIQQKLENCSAEEKALVF
POPTR_0022s00840.3
PUF
671
705
EVLPHASKLMTDVFGNYLIQKVFEYGSMEQRKELA
POPTR_0022s00840.3
PUF
707
741
QLTGQILHLSLQMYGCRVIQKALDVIELDQKAQLV
POPTR_0022s00840.3
PUF
743
777
ELDGHVMKCVRDQNGNHVIQKCIESVPAEKIGFIF
POPTR_0022s00840.3
PUF
782
814
GEVATLSMHPYGCRVIQRVLEHCAYELQCEFIV
POPTR_0022s00840.3
PUF
816
850
EILESVLILAQDQYGNYVTQHVLERGKPRERYQII
POPTR_0022s00840.3
PUF
852
886
KLSGHIVLLSQHKFGSNVVEKCLEYGGATEREIII
POPTR_0022s00840.3
PUF
894
928
EGNDNLLTMMKDQYANYVVQKILDTCTDIQRAMLL
POPTR_0022s00840.4
PUF
635
669
DIVGHIVEFSADQHGSRFIQQKLENCSAEEKALVF
POPTR_0022s00840.4
PUF
671
705
EVLPHASKLMTDVFGNYLIQKVFEYGSMEQRKELA
POPTR_0022s00840.4
PUF
707
741
QLTGQILHLSLQMYGCRVIQKALDVIELDQKAQLV
POPTR_0022s00840.4
PUF
743
777
ELDGHVMKCVRDQNGNHVIQKCIESVPAEKIGFIF
POPTR_0022s00840.4
PUF
782
814
GEVATLSMHPYGCRVIQRVLEHCAYELQCEFIV
POPTR_0022s00840.4
PUF
816
850
EILESVLILAQDQYGNYVTQHVLERGKPRERYQII
POPTR_0022s00840.4
PUF
852
886
KLSGHIVLLSQHKFGSNVVEKCLEYGGATEREIII
POPTR_0022s00840.4
PUF
894
928
EGNDNLLTMMKDQYANYVVQKILDTCTDIQRAMLL
Links
Other
PUF
family RBPs
Other
Populus trichocarpa
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa000898m
Prunus persica
ppa000898m
N
0.840
MDP0000265231
Malus x domestica
MDP0000265231
N
0.836
cassava43126.valid.m1
Manihot esculenta
cassava43126.valid.m1
N
0.836
PK12245.1
Cannabis sativa
PK12245.1
N
0.826
Glyma15g17680.1
Glycine max
Glyma15g17680.1
N
0.822
GSVIVG00031557001
Vitis vinifera
GSVIVG00031557001
N
0.819
Glyma09g06460.1
Glycine max
Glyma09g06460.1
N
0.819
Glyma13g00670.1
Glycine max
Glyma13g00670.1
N
0.794
MDP0000917770
Malus x domestica
MDP0000917770
N
0.781
Medtr2g041730
Medicago truncatula
Medtr2g041730
N
0.776
MDP0000277305
Malus x domestica
MDP0000277305
N
0.770
ppa016404m
Prunus persica
ppa016404m
N
0.766
GSVIVG00029553001
Vitis vinifera
GSVIVG00029553001
N
0.748
B9HK27_POPTR
Populus trichocarpa
POPTR_0008s00490
N
0.748
cassava9350.m1
Manihot esculenta
cassava9350.m1
N
0.747
Cucsa.149730
Cucumis sativus
Cucsa.149730
N
0.745
30169.m006300
Ricinus communis
30169.m006300
N
0.740
mgf006786m
Mimulus guttatus
mgf006786m
N
0.738
mgf002285m
Mimulus guttatus
mgf002285m
N
0.737
BGIOSIBCE028530
Oryza indica
BGIOSIBCE028530
N
0.731
LOC_Os08g40830
Oryza sativa
LOC_Os08g40830
N
0.731
MDP0000313902
Malus x domestica
MDP0000313902
N
0.730
GRMZM2G035118
Zea mays
GRMZM2G035118
N
0.721
Sb07g026995
Sorghum bicolor
Sb07g026995
N
0.721
PK11972.1
Cannabis sativa
PK11972.1
N
0.720
APUM6
Arabidopsis thaliana
AT4G25880-TAIR-G
N
0.712
XM_002869600.1
Arabidopsis lyrata
scaffold_701722.1
N
0.708
GRMZM2G449123
Zea mays
GRMZM2G449123
N
0.706
gw1.2.45.1
Selaginella moellendorfii
gw1.2.45.1
N
0.701