POPTR_0022s00840 (Populus trichocarpa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 POPTR_0022s00840 T24434_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0022s00840.1 PUF 635 669
POPTR_0022s00840.1 PUF 671 705
POPTR_0022s00840.1 PUF 707 741
POPTR_0022s00840.1 PUF 743 777
POPTR_0022s00840.1 PUF 782 814
POPTR_0022s00840.1 PUF 816 850
POPTR_0022s00840.1 PUF 852 886
POPTR_0022s00840.1 PUF 894 928
POPTR_0022s00840.2 PUF 635 669
POPTR_0022s00840.2 PUF 671 705
POPTR_0022s00840.2 PUF 707 741
POPTR_0022s00840.2 PUF 743 777
POPTR_0022s00840.2 PUF 782 814
POPTR_0022s00840.2 PUF 816 835
POPTR_0022s00840.3 PUF 635 669
POPTR_0022s00840.3 PUF 671 705
POPTR_0022s00840.3 PUF 707 741
POPTR_0022s00840.3 PUF 743 777
POPTR_0022s00840.3 PUF 782 814
POPTR_0022s00840.3 PUF 816 850
POPTR_0022s00840.3 PUF 852 886
POPTR_0022s00840.3 PUF 894 928
POPTR_0022s00840.4 PUF 635 669
POPTR_0022s00840.4 PUF 671 705
POPTR_0022s00840.4 PUF 707 741
POPTR_0022s00840.4 PUF 743 777
POPTR_0022s00840.4 PUF 782 814
POPTR_0022s00840.4 PUF 816 850
POPTR_0022s00840.4 PUF 852 886
POPTR_0022s00840.4 PUF 894 928

Links

Other PUF family RBPs
Other Populus trichocarpa RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000898m Prunus persica ppa000898m N 0.840
MDP0000265231 Malus x domestica MDP0000265231 N 0.836
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.836
PK12245.1 Cannabis sativa PK12245.1 N 0.826
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.822
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.819
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.819
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.794
MDP0000917770 Malus x domestica MDP0000917770 N 0.781
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.776
MDP0000277305 Malus x domestica MDP0000277305 N 0.770
ppa016404m Prunus persica ppa016404m N 0.766
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.748
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.748
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.747
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.745
30169.m006300 Ricinus communis 30169.m006300 N 0.740
mgf006786m Mimulus guttatus mgf006786m N 0.738
mgf002285m Mimulus guttatus mgf002285m N 0.737
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.731
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.731
MDP0000313902 Malus x domestica MDP0000313902 N 0.730
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.721
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.721
PK11972.1 Cannabis sativa PK11972.1 N 0.720
APUM6 Arabidopsis thaliana AT4G25880-TAIR-G N 0.712
XM_002869600.1 Arabidopsis lyrata scaffold_701722.1 N 0.708
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.706
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.701