APUM6 (Arabidopsis thaliana)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 AT4G25880-TAIR-G T24027_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT4G25880.1-P PUF 532 565
AT4G25880.1-P PUF 568 602
AT4G25880.1-P PUF 605 637
AT4G25880.1-P PUF 641 674
AT4G25880.1-P PUF 676 708
AT4G25880.1-P PUF 713 746
AT4G25880.1-P PUF 749 783
AT4G25880.1-P PUF 791 825
AT4G25880.2-P PUF 541 559
AT4G25880.2-P PUF 562 596
AT4G25880.2-P PUF 599 631
AT4G25880.2-P PUF 635 668
AT4G25880.2-P PUF 670 702
AT4G25880.2-P PUF 707 740
AT4G25880.2-P PUF 743 777
AT4G25880.2-P PUF 785 819
AT4G25880.3-P PUF 541 559
AT4G25880.3-P PUF 562 596
AT4G25880.3-P PUF 599 631
AT4G25880.3-P PUF 635 668
AT4G25880.3-P PUF 670 702
AT4G25880.3-P PUF 707 740
AT4G25880.3-P PUF 743 777
AT4G25880.3-P PUF 785 819

Links

Other PUF family RBPs
Other Arabidopsis thaliana RBPs

10 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002869600.1 Arabidopsis lyrata scaffold_701722.1 N 0.974
ppa000898m Prunus persica ppa000898m N 0.730
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.730
MDP0000265231 Malus x domestica MDP0000265231 N 0.722
PK12245.1 Cannabis sativa PK12245.1 N 0.719
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.712
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.708
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.708
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.701