gw1.8.62.1 (Trichoderma virens)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 gw1.8.62.1 T24913_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.8.62.1 PUF 323 356
gw1.8.62.1 PUF 359 390
gw1.8.62.1 PUF 397 430
gw1.8.62.1 PUF 436 466
gw1.8.62.1 PUF 469 499
gw1.8.62.1 PUF 505 538
gw1.8.62.1 PUF 541 574
gw1.8.62.1 PUF 576 610

Links

Other PUF family RBPs
Other Trichoderma virens RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1Plus.C_70288 Trichoderma atroviride estExt_Genewise1Plus.C_70288 N 0.900
estExt_Genewise1Plus.C_sca_1_chr1_3_00914 Nectria haematococca estExt_Genewise1Plus.C_sca_1_chr1_3_00914 N 0.896
FOXG_00799 Fusarium oxysporum FOXG_00799 N 0.877
FVEG_00716 Fusarium verticillioides FVEG_00716 N 0.874
FGSG_00841 Fusarium graminearum FGSG_00841 N 0.859
e_gw1.11.407.1 Trichoderma reesei e_gw1.11.407.1 N 0.851
GLRG_08647 Colletotrichum graminicola GLRG_08647 N 0.816
VDBG_05326 Verticillium albo atrum VDBG_05326 N 0.796
VDAG_06977 Verticillium dahliae VDAG_06977 N 0.796
estExt_Genewise1.C_61114 Thielavia terrestris estExt_Genewise1.C_61114 N 0.760
fgenesh1_pm.7_#_395 Myceliophthora thermophila fgenesh1_pm.7_#_395 N 0.759
estExt_fgenesh1_pg.C_20906 Cryphonectria parasitica estExt_fgenesh1_pg.C_20906 N 0.758
SS1G_03751 Sclerotinia sclerotiorum SS1G_03751 N 0.757
CHGG_07853 Chaetomium globosum CHGG_07853 N 0.757
MGG_14563 Magnaporthe oryzae MGG_14563 N 0.751
BC1G_04124 Botrytis cinerea BC1G_04124 N 0.747
NCU11928 Neurospora crassa NCU11928 N 0.738
e_gw1.11.367.1 Neurospora discreta e_gw1.11.367.1 N 0.738
estExt_Genewise1.C_130193 Neurospora tetrasperma estExt_Genewise1.C_130193 N 0.738