CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Sharpin
(
Rattus norvegicus
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
ENSRNOG00000012812
T26764_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000018032
RanBP ZF
345
370
GWSCPSCTFINASNRPGCEMCSTQRP
Links
Other
RanBP ZF
family RBPs
Other
Rattus norvegicus
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Sharpin
Mus musculus
ENSMUSG00000022552
N
1.000
SHARPIN
Sus scrofa
ENSSSCG00000005914
N
0.923
SHARPIN
Cavia porcellus
ENSCPOG00000013242
N
0.923
LOC100065232
Equus caballus
ENSECAG00000001400
N
0.923
SHARPIN
Bos taurus
ENSBTAG00000012235
N
0.885
LOC100392136
Callithrix jacchus
ENSCJAG00000021452
N
0.885
SHARPIN
Homo sapiens
ENSG00000179526
N
0.852
SHARPIN
Gorilla gorilla
ENSGGOG00000027471
N
0.852
SHARPIN
Macaca mulatta
ENSMMUG00000007152
N
0.815
SHARPIN
Monodelphis domestica
ENSMODG00000010491
N
0.815
ENSMGAG00000007903
Meleagris gallopavo
ENSMGAG00000007903
N
0.808
CU693494.1
Danio rerio
ENSDARG00000076995
N
0.808
ENSTRUG00000006949
Takifugu rubripes
ENSTRUG00000006949
N
0.769
SHARPIN
Gallus gallus
ENSGALG00000022341
N
0.750
ENSGACG00000002544
Gasterosteus aculeatus
ENSGACG00000002544
N
0.741
SHARPIN
Anolis carolinensis
ENSACAG00000007245
N
0.741
ENSORLG00000007392
Oryzias latipes
ENSORLG00000007392
N
0.714
RBCK1
Canis familiaris
ENSCAFG00000006921
N
0.704