CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MGG_06218
(
Magnaporthe oryzae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MGG_06218
T29765_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MGG_06218T0
RRM
205
275
IVIKNIPFNVRKETLQSLMVDMNLPQPYAFNYHFDQGVFRGLAFANFAHPEETKVVINSMNGMDVSGRKLR
Links
Other
RRM
family RBPs
Other
Magnaporthe oryzae
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pg.C_80160
Trichoderma virens
estExt_fgenesh1_pg.C_80160
N
0.803
fgenesh1_pm.C_scaffold_19000008
Trichoderma atroviride
fgenesh1_pm.C_scaffold_19000008
N
0.789
FGSG_01629
Fusarium graminearum
FGSG_01629
N
0.775
fgenesh1_pg.C_scaffold_2001068
Cryphonectria parasitica
fgenesh1_pg.C_scaffold_2001068
N
0.775
fgenesh1_pm.sca_8_chr1_1_0000077
Nectria haematococca
fgenesh1_pm.sca_8_chr1_1_0000077
N
0.775
FOXG_11073
Fusarium oxysporum
FOXG_11073
N
0.775
FVEG_09726
Fusarium verticillioides
FVEG_09726
N
0.775
VDBG_05689
Verticillium albo atrum
VDBG_05689
N
0.775
GLRG_06288
Colletotrichum graminicola
GLRG_06288
N
0.775
VDAG_07628
Verticillium dahliae
VDAG_07628
N
0.775
fgenesh1_pm.C_scaffold_32000008
Trichoderma reesei
fgenesh1_pm.C_scaffold_32000008
N
0.761
Pa_6_11740
Podospora anserina
Pa_6_11740
N
0.718
estExt_Genewise1.C_110656
Neurospora discreta
estExt_Genewise1.C_110656
N
0.704
estExt_fgenesh2_pm.C_60019
Thielavia terrestris
estExt_fgenesh2_pm.C_60019
N
0.704
estExt_fgenesh1_pm.C_190004
Cochliobolus heterostrophus C5
estExt_fgenesh1_pm.C_190004
N
0.704
NCU05343
Neurospora crassa
NCU05343
N
0.704
CPSG_00675
Coccidioides posadasii
CPSG_00675
N
0.704
CIMG_06397
Coccidioides immitis
CIMG_06397
N
0.704
EAT83231.2
Phaeosphaeria nodorum
EAT83231.2
N
0.704
AB09303.1
Alternaria brassicicola
AB09303.1
N
0.704
estExt_Genewise1Plus.C_570036
Neurospora tetrasperma
estExt_Genewise1Plus.C_570036
N
0.704
SNOG_09039
Stagonospora nodorum
SNOG_09039
N
0.704
fgenesh1_pm.7_#_729
Myceliophthora thermophila
fgenesh1_pm.7_#_729
N
0.704