fgenesh1_pm.C_scaffold_32000008 (Trichoderma reesei)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.C_scaffold_32000008 T52078_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_32000008 RRM 179 249

Links

Other RRM family RBPs
Other Trichoderma reesei RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pm.sca_8_chr1_1_0000077 Nectria haematococca fgenesh1_pm.sca_8_chr1_1_0000077 N 0.958
FGSG_01629 Fusarium graminearum FGSG_01629 N 0.958
FOXG_11073 Fusarium oxysporum FOXG_11073 N 0.958
FVEG_09726 Fusarium verticillioides FVEG_09726 N 0.958
fgenesh1_pm.C_scaffold_19000008 Trichoderma atroviride fgenesh1_pm.C_scaffold_19000008 N 0.944
estExt_fgenesh1_pg.C_80160 Trichoderma virens estExt_fgenesh1_pg.C_80160 N 0.944
GLRG_06288 Colletotrichum graminicola GLRG_06288 N 0.901
VDAG_07628 Verticillium dahliae VDAG_07628 N 0.887
VDBG_05689 Verticillium albo atrum VDBG_05689 N 0.887
fgenesh1_pg.C_scaffold_2001068 Cryphonectria parasitica fgenesh1_pg.C_scaffold_2001068 N 0.817
estExt_fgenesh2_pm.C_60019 Thielavia terrestris estExt_fgenesh2_pm.C_60019 N 0.761
MGG_06218 Magnaporthe oryzae MGG_06218 N 0.761
fgenesh1_pm.7_#_729 Myceliophthora thermophila fgenesh1_pm.7_#_729 N 0.761
Pa_6_11740 Podospora anserina Pa_6_11740 N 0.746
UREG_04006 Uncinocarpus reesii UREG_04006 N 0.732
e_gw1.5.456.1 Mycosphaerella fijiensis e_gw1.5.456.1 N 0.732
SS1G_02057 Sclerotinia sclerotiorum SS1G_02057 N 0.732
estExt_Genewise1Plus.C_570036 Neurospora tetrasperma estExt_Genewise1Plus.C_570036 N 0.732
NCU05343 Neurospora crassa NCU05343 N 0.732
CHGG_08312 Chaetomium globosum CHGG_08312 N 0.732
estExt_Genewise1.C_110656 Neurospora discreta estExt_Genewise1.C_110656 N 0.732
CIMG_06397 Coccidioides immitis CIMG_06397 N 0.718
EAT83231.2 Phaeosphaeria nodorum EAT83231.2 N 0.718
SNOG_09039 Stagonospora nodorum SNOG_09039 N 0.718
HCAG_04905 Histoplasma capsulatum HCAG_04905 N 0.718
CPSG_00675 Coccidioides posadasii CPSG_00675 N 0.718
PMAA_039640 Penicillium marneffei PMAA_039640 N 0.718
estExt_fgenesh1_pg.C_chr_80368 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_80368 N 0.718
estExt_fgenesh1_pm.C_190004 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_190004 N 0.704
PABG_00017 Paracoccidioides brasiliensis PABG_00017 N 0.704
MCYG_02010 Microsporum canis MCYG_02010 N 0.704
BDBG_02675 Blastomyces dermatitidis BDBG_02675 N 0.704
ARB_00840 Arthroderma benhamiae ARB_00840 N 0.704
AB09303.1 Alternaria brassicicola AB09303.1 N 0.704
MGYG_04073 Microsporum gypseum MGYG_04073 N 0.704
TEQG_06159 Trichophyton equinum TEQG_06159 N 0.704
TRV_07498 Trichophyton verrucosum TRV_07498 N 0.704
TESG_06836 Trichophyton tonsurans TESG_06836 N 0.704
TERG_04408 Trichophyton rubrum TERG_04408 N 0.704
ACLA_003320 Aspergillus clavatus CADACLAG00000413 N 0.704