fgenesh1_pm.C_scaffold_19000008 (Trichoderma atroviride)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.C_scaffold_19000008 T52071_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_19000008 RRM 178 248

Links

Other RRM family RBPs
Other Trichoderma atroviride RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh1_pg.C_80160 Trichoderma virens estExt_fgenesh1_pg.C_80160 N 0.986
FGSG_01629 Fusarium graminearum FGSG_01629 N 0.972
fgenesh1_pm.sca_8_chr1_1_0000077 Nectria haematococca fgenesh1_pm.sca_8_chr1_1_0000077 N 0.972
FOXG_11073 Fusarium oxysporum FOXG_11073 N 0.972
FVEG_09726 Fusarium verticillioides FVEG_09726 N 0.972
fgenesh1_pm.C_scaffold_32000008 Trichoderma reesei fgenesh1_pm.C_scaffold_32000008 N 0.944
GLRG_06288 Colletotrichum graminicola GLRG_06288 N 0.901
VDBG_05689 Verticillium albo atrum VDBG_05689 N 0.887
VDAG_07628 Verticillium dahliae VDAG_07628 N 0.887
fgenesh1_pg.C_scaffold_2001068 Cryphonectria parasitica fgenesh1_pg.C_scaffold_2001068 N 0.803
MGG_06218 Magnaporthe oryzae MGG_06218 N 0.789
Pa_6_11740 Podospora anserina Pa_6_11740 N 0.775
NCU05343 Neurospora crassa NCU05343 N 0.761
estExt_fgenesh2_pm.C_60019 Thielavia terrestris estExt_fgenesh2_pm.C_60019 N 0.761
estExt_Genewise1Plus.C_570036 Neurospora tetrasperma estExt_Genewise1Plus.C_570036 N 0.761
fgenesh1_pm.7_#_729 Myceliophthora thermophila fgenesh1_pm.7_#_729 N 0.761
estExt_Genewise1.C_110656 Neurospora discreta estExt_Genewise1.C_110656 N 0.761
CPSG_00675 Coccidioides posadasii CPSG_00675 N 0.732
EAT83231.2 Phaeosphaeria nodorum EAT83231.2 N 0.732
CIMG_06397 Coccidioides immitis CIMG_06397 N 0.732
CHGG_08312 Chaetomium globosum CHGG_08312 N 0.732
SNOG_09039 Stagonospora nodorum SNOG_09039 N 0.732
TRV_07498 Trichophyton verrucosum TRV_07498 N 0.718
UREG_04006 Uncinocarpus reesii UREG_04006 N 0.718
estExt_fgenesh1_pm.C_190004 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_190004 N 0.718
e_gw1.5.456.1 Mycosphaerella fijiensis e_gw1.5.456.1 N 0.718
AB09303.1 Alternaria brassicicola AB09303.1 N 0.718
TESG_06836 Trichophyton tonsurans TESG_06836 N 0.718
SS1G_02057 Sclerotinia sclerotiorum SS1G_02057 N 0.718
MCYG_02010 Microsporum canis MCYG_02010 N 0.718
BDBG_02675 Blastomyces dermatitidis BDBG_02675 N 0.718
TERG_04408 Trichophyton rubrum TERG_04408 N 0.718
ARB_00840 Arthroderma benhamiae ARB_00840 N 0.718
TEQG_06159 Trichophyton equinum TEQG_06159 N 0.718
MGYG_04073 Microsporum gypseum MGYG_04073 N 0.718
PABG_00017 Paracoccidioides brasiliensis PABG_00017 N 0.718
NFIA_040180 Neosartorya fischeri CADNFIAG00003684 N 0.704
ATEG_09814 Aspergillus terreus CADATEAG00005663 N 0.704
PTRG_00597 Pyrenophora tritici repentis PTRG_00597 N 0.704
PMAA_039640 Penicillium marneffei PMAA_039640 N 0.704
Pc21g14530 Penicillium chrysogenum Pc21g14530 N 0.704
fgenesh1_pm.00168_#_115 Aspergillus carbonarius fgenesh1_pm.00168_#_115 N 0.704
HCAG_04905 Histoplasma capsulatum HCAG_04905 N 0.704
AFLA_025070 Aspergillus flavus CADAFLAG00001883 N 0.704
ANIA_08038 Aspergillus nidulans CADANIAG00004059 N 0.704
An16g01800 Aspergillus niger CADANGAG00012651 N 0.704
AFUA_5G01940 Aspergillus fumigatus CADAFUAG00002843 N 0.704
AO090003001325 Aspergillus oryzae CADAORAG00001849 N 0.704