PK01699.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK01699.1 T31624_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK01699.1 RRM 102 172

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00026504001 Vitis vinifera GSVIVG00026504001 N 0.887
ppa007553m Prunus persica ppa007553m N 0.873
Cucsa.055310 Cucumis sativus Cucsa.055310 N 0.873
30169.m006469 Ricinus communis 30169.m006469 N 0.859
XM_002894275.1 Arabidopsis lyrata scaffold_104917.1 N 0.859
cassava2157.valid.m1 Manihot esculenta cassava2157.valid.m1 N 0.859
cassava30654.valid.m1 Manihot esculenta cassava30654.valid.m1 N 0.845
mgf001224m Mimulus guttatus mgf001224m N 0.831
Glyma01g43710.1 Glycine max Glyma01g43710.1 N 0.831
Glyma11g01770.1 Glycine max Glyma11g01770.1 N 0.831
e_gw1.31.212.1 Physcomitrella patens e_gw1.31.212.1 N 0.831
MDP0000238271 Malus x domestica MDP0000238271 N 0.817
e_gw1.136.78.1 Physcomitrella patens e_gw1.136.78.1 N 0.817
chr2.CM0018.160.nd Lotus japonicus chr2.CM0018.160.nd N 0.817
MDP0000242811 Malus x domestica MDP0000242811 N 0.817
MDP0000242810 Malus x domestica MDP0000242810 N 0.817
mgf005614m Mimulus guttatus mgf005614m N 0.817
BRADI2G36710 Brachypodium distachyon BRADI2G36710 N 0.803
BRADI2G13390 Brachypodium distachyon BRADI2G13390 N 0.803
MDP0000279392 Malus x domestica MDP0000279392 N 0.803
MDP0000749149 Malus x domestica MDP0000749149 N 0.803
AC233958.1_FG002 Zea mays AC233958.1_FG002 N 0.803
GRMZM2G172399 Zea mays GRMZM2G172399 N 0.803
Medtr5g008930 Medicago truncatula Medtr5g008930 N 0.789
LOC_Os05g04850 Oryza sativa LOC_Os05g04850 N 0.789
e_gw1.23.492.1 Selaginella moellendorfii e_gw1.23.492.1 N 0.789
BGIOSIBCE017506 Oryza indica BGIOSIBCE017506 N 0.789
SB09G003130 Sorghum bicolor Sb09g003130 N 0.789
Y14 Arabidopsis thaliana AT1G51510-TAIR-G N 0.775
SB03G015351 Sorghum bicolor Sb03g015351 N 0.775
A9PID5_POPTR Populus trichocarpa POPTR_0009s05550 N 0.775
A9PCB0_POPTR Populus trichocarpa POPTR_0001s26260 N 0.775
MDP0000343280 Malus x domestica MDP0000343280 N 0.761
e_gw1.06.00.460.1 Ostreococcus tauri e_gw1.06.00.460.1 N 0.732
EuGene.0000060244 Micromonas pusilla EuGene.0000060244 N 0.732
EuGene.0600010284 Ostreococcus RCC809 EuGene.0600010284 N 0.718
estExt_fgenesh2_kg.C_60460 Agaricus bisporus estExt_fgenesh2_kg.C_60460 I 0.704
estExt_fgenesh2_pg.C_4600002 Branchiostoma floridae estExt_fgenesh2_pg.C_4600002 I 0.704
e_gw.589.3.1 Branchiostoma floridae e_gw.589.3.1 I 0.704
B9H9K0_POPTR Populus trichocarpa POPTR_0006s04690 N 0.704
e_gww2.3.582.1 Phanerochaete chrysosporium e_gww2.3.582.1 N 0.704
estExt_fgenesh1_kg.C_20142 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_20142 N 0.704
AB00849.1 Alternaria brassicicola AB00849.1 N 0.704
gwEuk.6.623.1 Ostreococcus lucimarinus gwEuk.6.623.1 N 0.704
e_gw1.6.577.1 Heterobasidion annosum e_gw1.6.577.1 N 0.704