ENSCING00000013568 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000013568 T35438_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000024858 RRM 108 177

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q8MY63_CIOSA Ciona savignyi ENSCSAVG00000003324 N 0.914
amel4_ncbi_hmm10980 Apis mellifera amel4_ncbi_hmm10980 N 0.786
THOC4 Tetraodon nigroviridis ENSTNIG00000011595 N 0.771
THOC4 Tursiops truncatus ENSTTRG00000012275 N 0.757
thoc4 Xenopus tropicalis ENSXETG00000005391 N 0.757
Thoc4 Rattus norvegicus ENSRNOG00000036687 N 0.757
THOC4 Pan troglodytes ENSPTRG00000009774 N 0.757
ENSPPYG00000008749 Pongo pygmaeus ENSPPYG00000008749 N 0.757
ISCW001860 Ixodes scapularis ISCW001860 N 0.757
THOC4 Pteropus vampyrus ENSPVAG00000017866 N 0.757
Ame_R000656 Ailuropoda melanoleuca Ame_R000656 N 0.757
Q6GLW1 Xenopus laevis Q6GLW1 N 0.757
THOC4_BOVIN Bos taurus ENSBTAG00000008498 N 0.757
THOC4 Anolis carolinensis ENSACAG00000010526 N 0.757
Q58EA2 Xenopus laevis Q58EA2 N 0.757
AAH92013 Xenopus laevis AAH92013 N 0.757
THOC4 Oryzias latipes ENSORLG00000012331 N 0.757
AAH74336 Xenopus laevis AAH74336 N 0.757
THOC4 Canis familiaris ENSCAFG00000005877 N 0.757
ENSTBEG00000005834 Tupaia belangeri ENSTBEG00000005834 N 0.757
THOC4 Gasterosteus aculeatus ENSGACG00000013328 N 0.757
ENSMGAG00000005389 Meleagris gallopavo ENSMGAG00000005389 N 0.757
THOC4 Microcebus murinus ENSMICG00000017403 N 0.757
THOC4 Gallus gallus ENSGALG00000007237 N 0.757
THOC4 Loxodonta africana ENSLAFG00000003083 N 0.757
THOC4 Otolemur garnettii ENSOGAG00000012409 N 0.757
THOC4 Gorilla gorilla ENSGGOG00000013935 N 0.757
THOC4 Homo sapiens ENSG00000183684 N 0.757
THOC4 Echinops telfairi ENSETEG00000016596 N 0.757
Thoc4 Mus musculus ENSMUSG00000025134 N 0.757
THOC4 Cavia porcellus ENSCPOG00000013710 N 0.757
THOC4 Monodelphis domestica ENSMODG00000003030 N 0.757
THOC4 Macaca mulatta ENSMMUG00000012884 N 0.757
LOC100055097 Equus caballus ENSECAG00000018754 N 0.757
tho4 Danio rerio ENSDARG00000077732 N 0.757
BGIBMGA005323 Bombyx mori BGIBMGA005323 N 0.743
e_gw.394.68.1 Branchiostoma floridae e_gw.394.68.1 N 0.743
AGAP006733 Anopheles gambiae AGAP006733 N 0.743
Refbp2 Mus musculus ENSMUSG00000060244 N 0.743
e_gw.5.817.1 Branchiostoma floridae e_gw.5.817.1 N 0.743
ENSCJAG00000021543 Callithrix jacchus ENSCJAG00000021543 N 0.729
THOC4 Erinaceus europaeus ENSEEUG00000010164 N 0.714
nasonia_NCBI_hmm488134 Nasonia vitripennis nasonia_NCBI_hmm488134 N 0.714
ENSMLUG00000009555 Myotis lucifugus ENSMLUG00000009555 N 0.714
THOC4 Takifugu rubripes ENSTRUG00000008828 N 0.714
GL12678 Drosophila persimilis FBgn0150284 N 0.714
XP_001185635.1 Strongylocentrotus purpuratus XP_001185635.1 N 0.714
XP_782040.2 Strongylocentrotus purpuratus XP_782040.2 N 0.714
PASA_GEN_1400063 Daphnia pulex PASA_GEN_1400063 N 0.714
GA10707-RA Drosophila pseudoobscura FBgn0070763 N 0.714
CPIJ007834 Culex quinquefasciatus CPIJ007834 N 0.700
ENSTRUG00000003051 Takifugu rubripes ENSTRUG00000003051 N 0.700
PHUM023420 Pediculus humanus PHUM023420 N 0.700
CpipJ_CPIJ007834 Culex pipiens CpipJ_CPIJ007834 N 0.700
AAEL005114 Aedes aegypti AAEL005114 N 0.700
AAEL015263 Aedes aegypti AAEL015263 N 0.700