LOC100393736 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000015950 T35629_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000029413 RRM 21 92
ENSCJAP00000029413 RRM 184 252
ENSCJAP00000029422 RRM 68 136
ENSCJAP00000029426 RRM 21 92
ENSCJAP00000029426 RRM 184 252
ENSCJAP00000048132 RRM 68 136
ENSCJAP00000049691 RRM 68 136

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SREK1 Taeniopygia guttata ENSTGUG00000002935 N 1.000
ENSPPYG00000015515 Pongo pygmaeus ENSPPYG00000015515 N 1.000
SREK1 Pan troglodytes ENSPTRG00000016936 N 1.000
SFRS12 Macaca mulatta ENSMMUG00000014586 N 1.000
SREK1 Monodelphis domestica ENSMODG00000019665 N 1.000
SREK1 Ornithorhynchus anatinus ENSOANG00000005029 N 1.000
Srek1 Mus musculus ENSMUSG00000032621 N 1.000
SREK1 Loxodonta africana ENSLAFG00000013853 N 1.000
SREK1 Gorilla gorilla ENSGGOG00000004737 N 1.000
SFRS12 Equus caballus ENSECAG00000018080 N 1.000
Ame_R007411 Ailuropoda melanoleuca Ame_R007411 N 1.000
SREK1 Canis familiaris ENSCAFG00000007560 N 1.000
SREK1 Sorex araneus ENSSARG00000000795 N 1.000
Sfrs12 Rattus norvegicus ENSRNOG00000032735 N 1.000
SREK1 Pteropus vampyrus ENSPVAG00000009763 N 1.000
SREK1 Homo sapiens ENSG00000153914 N 1.000
SREK1 Myotis lucifugus ENSMLUG00000014801 N 0.993
SREK1 Erinaceus europaeus ENSEEUG00000003430 N 0.993
SREK1 Oryctolagus cuniculus ENSOCUG00000001319 N 0.993
SREK1 Echinops telfairi ENSETEG00000012977 N 0.986
SREK1 Ochotona princeps ENSOPRG00000012111 N 0.979
SREK1 Gallus gallus ENSGALG00000014775 N 0.950
SREK1 Sus scrofa ENSSSCG00000016955 N 0.936
sfrs12 Xenopus tropicalis ENSXETG00000021460 N 0.915
SREK1 Takifugu rubripes ENSTRUG00000002960 N 0.899
SREK1 Oryzias latipes ENSORLG00000002711 N 0.887
SREK1 Tetraodon nigroviridis ENSTNIG00000013463 N 0.879
SREK1 Danio rerio ENSDARG00000009764 N 0.872
PDE4C Meleagris gallopavo ENSMGAG00000006395 N 0.870
Srek1 Dipodomys ordii ENSDORG00000001323 N 0.870
SREK1 Choloepus hoffmanni ENSCHOG00000004956 N 0.851
estExt_fgenesh2_pg.C_2190047 Branchiostoma floridae estExt_fgenesh2_pg.C_2190047 N 0.730
estExt_fgenesh2_pg.C_2190052 Branchiostoma floridae estExt_fgenesh2_pg.C_2190052 N 0.730
SREK1 Vicugna pacos ENSVPAG00000008654 N 0.730
SREK1 Procavia capensis ENSPCAG00000004955 N 0.730
SREK1 Tursiops truncatus ENSTTRG00000009684 N 0.730
SREK1 Spermophilus tridecemlineatus ENSSTOG00000008850 N 0.723
SREK1 Microcebus murinus ENSMICG00000005759 N 0.716