CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SREK1
(
Gorilla gorilla
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGGOG00000004737
T37791_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000004644
RRM
21
92
IQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKFRDPSSVGVAQHLTNTVFIDRALI
ENSGGOP00000004644
RRM
184
252
VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK
ENSGGOP00000027672
RRM
21
92
IQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKFRDPSSVGVAQHLTNTVFIDRALI
ENSGGOP00000027672
RRM
184
252
VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK
Links
Other
RRM
family RBPs
Other
Gorilla gorilla
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SREK1
Homo sapiens
ENSG00000153914
N
1.000
Ame_R007411
Ailuropoda melanoleuca
Ame_R007411
N
1.000
SREK1
Pan troglodytes
ENSPTRG00000016936
N
1.000
SREK1
Pteropus vampyrus
ENSPVAG00000009763
N
1.000
SFRS12
Macaca mulatta
ENSMMUG00000014586
N
1.000
SREK1
Loxodonta africana
ENSLAFG00000013853
N
1.000
LOC100393736
Callithrix jacchus
ENSCJAG00000015950
N
1.000
SREK1
Sorex araneus
ENSSARG00000000795
N
1.000
ENSPPYG00000015515
Pongo pygmaeus
ENSPPYG00000015515
N
1.000
SREK1
Oryctolagus cuniculus
ENSOCUG00000001319
N
0.993
SREK1
Erinaceus europaeus
ENSEEUG00000003430
N
0.993
SREK1
Myotis lucifugus
ENSMLUG00000014801
N
0.993
SREK1
Echinops telfairi
ENSETEG00000012977
N
0.986
Srek1
Mus musculus
ENSMUSG00000032621
N
0.986
SREK1
Ochotona princeps
ENSOPRG00000012111
N
0.979
SREK1
Gallus gallus
ENSGALG00000014775
N
0.950
SREK1
Sus scrofa
ENSSSCG00000016955
N
0.936
sfrs12
Xenopus tropicalis
ENSXETG00000021460
N
0.915
SREK1
Takifugu rubripes
ENSTRUG00000002960
N
0.887
SREK1
Oryzias latipes
ENSORLG00000002711
N
0.887
SREK1
Tetraodon nigroviridis
ENSTNIG00000013463
N
0.879
SREK1
Danio rerio
ENSDARG00000009764
N
0.872
SREK1
Choloepus hoffmanni
ENSCHOG00000004956
N
0.851
SREK1
Ornithorhynchus anatinus
ENSOANG00000005029
N
0.752
SREK1
Tursiops truncatus
ENSTTRG00000009684
N
0.730
SREK1
Procavia capensis
ENSPCAG00000004955
N
0.730
estExt_fgenesh2_pg.C_2190047
Branchiostoma floridae
estExt_fgenesh2_pg.C_2190047
N
0.730
SREK1
Vicugna pacos
ENSVPAG00000008654
N
0.730
estExt_fgenesh2_pg.C_2190052
Branchiostoma floridae
estExt_fgenesh2_pg.C_2190052
N
0.730
SREK1
Spermophilus tridecemlineatus
ENSSTOG00000008850
N
0.723
SREK1
Microcebus murinus
ENSMICG00000005759
N
0.716