sfrs12 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000021460 T42937_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000012273 RRM 6 77
ENSXETP00000046395 RRM 9 80
ENSXETP00000046396 RRM 9 80
ENSXETP00000046396 RRM 171 239
ENSXETP00000046399 RRM 67 135
ENSXETP00000057131 RRM 67 135
ENSXETP00000057132 RRM 9 80
ENSXETP00000057132 RRM 142 171

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SREK1 Dasypus novemcinctus ENSDNOG00000010327 N 0.931
ENSPPYG00000015515 Pongo pygmaeus ENSPPYG00000015515 N 0.931
SREK1 Anolis carolinensis ENSACAG00000016152 N 0.917
SFRS12 Macaca mulatta ENSMMUG00000014586 N 0.915
SREK1 Sorex araneus ENSSARG00000000795 N 0.915
LOC100393736 Callithrix jacchus ENSCJAG00000015950 N 0.915
SREK1 Loxodonta africana ENSLAFG00000013853 N 0.915
SREK1 Homo sapiens ENSG00000153914 N 0.915
SREK1 Gorilla gorilla ENSGGOG00000004737 N 0.915
Ame_R007411 Ailuropoda melanoleuca Ame_R007411 N 0.915
SREK1 Pteropus vampyrus ENSPVAG00000009763 N 0.915
SREK1 Pan troglodytes ENSPTRG00000016936 N 0.915
SREK1 Erinaceus europaeus ENSEEUG00000003430 N 0.908
SREK1 Oryctolagus cuniculus ENSOCUG00000001319 N 0.908
SREK1 Myotis lucifugus ENSMLUG00000014801 N 0.908
Srek1 Mus musculus ENSMUSG00000032621 N 0.901
SREK1 Gallus gallus ENSGALG00000014775 N 0.901
SREK1 Echinops telfairi ENSETEG00000012977 N 0.901
SREK1 Ornithorhynchus anatinus ENSOANG00000005029 N 0.899
Sfrs12 Rattus norvegicus ENSRNOG00000032735 N 0.899
SREK1 Taeniopygia guttata ENSTGUG00000002935 N 0.899
SREK1 Monodelphis domestica ENSMODG00000019665 N 0.899
SREK1 Canis familiaris ENSCAFG00000007560 N 0.899
SFRS12 Equus caballus ENSECAG00000018080 N 0.899
SREK1 Danio rerio ENSDARG00000009764 N 0.894
SREK1 Ochotona princeps ENSOPRG00000012111 N 0.894
SREK1 Oryzias latipes ENSORLG00000002711 N 0.887
SREK1 Takifugu rubripes ENSTRUG00000002960 N 0.884
SREK1 Cavia porcellus ENSCPOG00000008925 N 0.883
SREK1 Bos taurus ENSBTAG00000007321 N 0.883
SREK1 Tetraodon nigroviridis ENSTNIG00000013463 N 0.879
SREK1 Felis catus ENSFCAG00000015559 N 0.875
SREK1 Sus scrofa ENSSSCG00000016955 N 0.851
PDE4C Meleagris gallopavo ENSMGAG00000006395 N 0.783
Srek1 Dipodomys ordii ENSDORG00000001323 N 0.783
SREK1 Choloepus hoffmanni ENSCHOG00000004956 N 0.780
SRSF11 Anolis carolinensis ENSACAG00000013654 N 0.722
estExt_fgenesh2_pg.C_2190047 Branchiostoma floridae estExt_fgenesh2_pg.C_2190047 N 0.702
estExt_fgenesh2_pg.C_2190052 Branchiostoma floridae estExt_fgenesh2_pg.C_2190052 N 0.702