CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RAVER2
(
Cavia porcellus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCPOG00000005986
T35783_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000005404
RRM
4
52
HDLLKDYELKYCYVDRNKRTAFVTLLDGDQARSAIRTFHQASFRGRDLV
ENSCPOP00000005404
RRM
62
131
LCVTRLPQSLTLEEFEALVRTYGSIERCFLVYSEVTGLSKGYGFVEYMKKDAAARARLELLGKRLGPSAL
ENSCPOP00000005404
RRM
151
221
LCVDQLPANYSDSGELLRCFSGVHTPVFCQLAQDEGRCAGGFAVVEYSSAQHAEEARQAASGLNIGGHTVQ
Links
Other
RRM
family RBPs
Other
Cavia porcellus
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RAVER2
Tarsius syrichta
ENSTSYG00000006019
N
0.737
RAVER2
Otolemur garnettii
ENSOGAG00000011157
N
0.733
RAVER2
Gorilla gorilla
ENSGGOG00000016447
N
0.732
RAVER2
Loxodonta africana
ENSLAFG00000012508
N
0.732
RAVER2
Equus caballus
ENSECAG00000022014
N
0.732
RAVER2
Canis familiaris
ENSCAFG00000018617
N
0.721
RAVER2
Tupaia belangeri
ENSTBEG00000009004
N
0.716
RAVER2
Ornithorhynchus anatinus
ENSOANG00000008327
N
0.716
RAVER2
Monodelphis domestica
ENSMODG00000001242
N
0.711
LOC100406727
Callithrix jacchus
ENSCJAG00000016724
N
0.709
RAVER2
Macaca mulatta
ENSMMUG00000018565
N
0.707
RAVER2
Pteropus vampyrus
ENSPVAG00000007172
N
0.705
ENSPPYG00000001271
Pongo pygmaeus
ENSPPYG00000001271
N
0.702